Evidence map›Paper›PMID 38439716›Full record

ArticleJournal of chemical theory and computation2024

Modeling Fe(II) Complexes Using Neural Networks.

Hongni Jin, Kenneth M Merz

Open access · hybridAbstract read
In one paragraph

Article in Journal of chemical theory and computation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Partial to Total Generation of 3D Transition-Metal Complexes.Journal of chemical theory and computation · 2024
    Article
  5. Simulating Metal-Imidazole Complexes.Journal of chemical theory and computation · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hongni JinDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0009-0009-4345-6300
Kenneth M MerzDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-9139-5893
Michigan State University · US

Funding

Modeling Transition Metal Ion Binding to ProteinsR01GM130641 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KENNETH M. MERZ · 2019 to 2026
$2.5M
NIGMS NIH HHS R01 GM130641
6 · The paper itself

Abstract

We report a Fe(II) data set of more than 23000 conformers in both low-spin (LS) and high-spin (HS) states. This data set was generated to develop a neural network model that is capable of predicting the energy and the energy splitting as a function of the conformation of a Fe(II) organometallic complex. In order to achieve this, we propose a type of scaled electronic embedding to cover the long-range interactions implicitly in our neural network describing the Fe(II) organometallic complexes. For the total energy prediction, the lowest MAE is 0.037 eV, while the lowest MAE of the splitting energy is 0.030 eV. Compared to baseline models, which only incorporate short-range interactions, our scaled electronic embeddings improve the accuracy by over 70% for the prediction of the total energy and the splitting energy. With regard to semiempirical methods, our proposed models reduce the MAE, with respect to these methods, by 2 orders of magnitude.

Identifiers

PMID38439716
PMCPMC10976644
OpenAlexW4392470980

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.