Evidence map›Paper›PMID 38439617›Full record

ArticleDevelopment, growth & differentiation2024

Development of a heat-stable alkaline phosphatase reporter system for cis-regulatory analysis and its application to 3D digital imaging of Xenopus embryonic tissues.

Kiyo Sakagami, Takeshi Igawa, Kaori Saikawa, Yusuke Sakaguchi, Nusrat Hossain, Chiho Kato, Kazuhito Kinemori, Nanoka Suzuki, Makoto Suzuki, Akane Kawaguchi and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Development, growth & differentiation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Kiyo SakagamiDepartment of Animal Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.ORCID https://orcid.org/0000-0002-4997-2244
Takeshi IgawaAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.ORCID https://orcid.org/0000-0001-6880-6180
Kaori SaikawaDepartment of Animal Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Yusuke SakaguchiAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.
Nusrat HossainAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.ORCID https://orcid.org/0009-0005-4828-6874
Chiho KatoDepartment of Animal Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Kazuhito KinemoriAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.
Nanoka SuzukiAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.
Makoto SuzukiAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.ORCID https://orcid.org/0000-0002-5494-6593
Akane KawaguchiDepartment of Genomics and Evolutionary Biology, National Institute of Genetics, Shizuoka, Japan.
Haruki OchiInstitute for Promotion of Medical Science Research, Faculty of Medicine, Yamagata University, Yamagata, Japan.ORCID https://orcid.org/0000-0002-0088-581X
Yuki TajikaDepartment of Radiological Technology, Gunma Prefectural College of Health Sciences, Maebashi, Japan.
Hajime OginoAmphibian Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.ORCID https://orcid.org/0000-0003-2707-2330
Hiroshima University · JPNagahama Institute of Bio-Science and Technology · JPGunma Prefectural College of Health Sciences · JPNational Institute of Genetics · JPYamagata University · JP

Funding

Japan Society for the Promotion of Science (JSPS) 19K06689Japan Society for the Promotion of Science (JSPS) 22H02796Japan Society for the Promotion of Science (JSPS) 22K06240Takeda Science Foundation
6 · The paper itself

Abstract

Xenopus is one of the essential model systems for studying vertebrate development. However, one drawback of this system is that, because of the opacity of Xenopus embryos, 3D imaging analysis is limited to surface structures, explant cultures, and post-embryonic tadpoles. To develop a technique for 3D tissue/organ imaging in whole Xenopus embryos, we identified optimal conditions for using placental alkaline phosphatase (PLAP) as a transgenic reporter and applied it to the correlative light microscopy and block-face imaging (CoMBI) method for visualization of PLAP-expressing tissues/organs. In embryos whose endogenous alkaline phosphatase activities were heat-inactivated, PLAP staining visualized various tissue-specific enhancer/promoter activities in a manner consistent with green fluorescent protein (GFP) fluorescence. Furthermore, PLAP staining appeared to be more sensitive than GFP fluorescence as a reporter, and the resulting expression patterns were not mosaic, in striking contrast to the mosaic staining pattern of β-galactosidase expressed from the lacZ gene that was introduced by the same transgenesis method. Owing to efficient penetration of alkaline phosphatase substrates, PLAP activity was detected in deep tissues, such as the developing brain, spinal cord, heart, and somites, by whole-mount staining. The stained embryos were analyzed by the CoMBI method, resulting in the digital reconstruction of 3D images of the PLAP-expressing tissues. These results demonstrate the efficacy of the PLAP reporter system for detecting enhancer/promoter activities driving deep tissue expression and its combination with the CoMBI method as a powerful approach for 3D digital imaging analysis of specific tissue/organ structures in Xenopus embryos.

Indexed as

Alkaline PhosphataseHot TemperatureAnimalsAnimals, Genetically ModifiedFemalePlacentaPregnancyXenopus laevisAlkaline Phosphataseimagingplacental alkaline phosphatase (PLAP)reportertransgenesisXenopus

Identifiers

PMID38439617
PMCPMC11457516
OpenAlexW4392464044

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.