Evidence map›Paper›PMID 38436907›Full record

ArticleGenes & genomics2024

T-DNA insertion mutants of Arabidopsis DA1 orthologous genes displayed altered plant height and yield-related traits in rice (O. Sativa L.).

Kyu-Chan Shim, Ngoc Ha Luong, Thomas H Tai, Gyu-Ri Lee, Sang-Nag Ahn, Inkyu Park

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Article in Genes & genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

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3 · Its place in the literature

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0 citing papers in PubMed, 1 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Kyu-Chan ShimDepartment of Agronomy, College of Agriculture and Life Science, Chungnam National University, Daejeon, 34134, Republic of Korea. kcshim@cnu.ac.kr.ORCID 0000-0002-3020-7104
Ngoc Ha LuongDepartment of Agronomy, College of Agriculture and Life Science, Chungnam National University, Daejeon, 34134, Republic of Korea.
Thomas H TaiUSDA-ARS Crops Pathology and Genetics Research Unit, Davis, CA, 95616, USA.
Gyu-Ri LeeDepartment of Agronomy, College of Agriculture and Life Science, Chungnam National University, Daejeon, 34134, Republic of Korea.
Sang-Nag AhnDepartment of Agronomy, College of Agriculture and Life Science, Chungnam National University, Daejeon, 34134, Republic of Korea.
Inkyu ParkDepartment of Biology and Chemistry, Changwon National University, Changwon, 51140, Republic of Korea. pik6885@changwon.ac.kr.ORCID 0000-0002-9341-3108
Chungnam National University · KRAgricultural Research Service · USChangwon National University · KRUniversity of California, Davis · US

Funding

Ministry of Education 2023R1A6C101B022
6 · The paper itself

Abstract

backgroundThe Arabidopsis DA1 gene is a key player in the regulation of organ and seed development. To extend our understanding of its functional counterparts in rice, this study investigates the roles of orthologous genes, namely DA1, HDR3, HDR3.1, and the DA2 ortholog GW2, through the analysis of T-DNA insertion mutants.

objectiveThe aim of this research is to elucidate the impact of T-DNA insertions in DA1, HDR3, HDR3.1, and GW2 on agronomic traits in rice. By evaluating homozygous plants, we specifically focus on key parameters such as plant height, tiller number, days to heading, and grain size.

methodsT-DNA insertion locations were validated using PCR, and subsequent analyses were conducted on homozygous plants. Agronomic traits, including plant height, tiller number, days to heading, and grain size, were assessed. Additionally, leaf senescence assays were performed under dark incubation conditions to gauge the impact of T-DNA insertions on this physiological aspect.

resultsThe study revealed distinctive phenotypic outcomes associated with T-DNA insertions in HDR3, HDR3.1, GW2, and DA1. Specifically, HDR3 and HDR3.1 mutants exhibited significantly reduced plant height and smaller grain size, while GW2 and DA1 mutants displayed a notable increase in both plant height and grain size compared to the wild type variety Dongjin. Leaf senescence assays further indicated delayed leaf senescence in hdr3.1 mutants, contrasting with slightly earlier leaf senescence observed in hdr3 mutants under dark incubation.

conclusionsThe findings underscore the pivotal roles of DA1 orthologous genes in rice, shedding light on their significance in regulating plant growth and development. The observed phenotypic variations highlight the potential of these genes as targets for crop improvement strategies, offering insights that could contribute to the enhancement of agronomic traits in rice and potentially other crops.

Indexed as

ArabidopsisOryzaDNA, BacterialEdible GrainPlant LeavesDNA, BacterialT-DNADA1HDRRiceSeed sizeUbiquitin proteasome pathway

Identifiers

PMID38436907
OpenAlexW4392382369

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.