Evidence map›Paper›PMID 38436541›Full record

ArticleProteins2024

Pyroglutamylation modulates electronic properties and the conformational ensemble of the amyloid β-peptide.

Darcy S Davidson, Justin A Lemkul

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Darcy S DavidsonDepartment of Biochemistry, Virginia Tech, Blacksburg, Virginia, USA.ORCID 0000-0002-4496-2282
Justin A LemkulDepartment of Biochemistry, Virginia Tech, Blacksburg, Virginia, USA.ORCID 0000-0001-6661-8653
Virginia Tech · US

Funding

Exploring Electronic Polarization in Biomolecular Folding and InteractionsR35GM133754 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI Justin Alan Lemkul · 2019 to 2026
$2.2M
National Institute of Food and Agriculture VA-160092NIGMS NIH HHS R35 GM133754NIGMS NIH HHS R35GM133754
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a neurodegenerative disorder that is characterized by the formation of extracellular amyloid-β (Aβ) plaques. The underlying cause of AD is unknown, however, post-translational modifications (PTMs) of Aβ have been found in AD patients and are thought to play a role in protein aggregation. One such PTM is pyroglutamylation, which can occur at two sites in Aβ, Glu3 and Glu11. This modification of Aβ involves the truncation and charge-neutralization of N-terminal glutamate, causing Aβ to become more hydrophobic and prone to aggregation. The molecular mechanism by which the introduction of pyroglutamate (pE) promotes aggregation has not been determined. To gain a greater understanding of the role that charge neutralization and truncation of the N-terminus plays on Aβ conformational sampling, we used the Drude polarizable force field (FF) to perform molecular dynamics simulations on Aβ

Indexed as

Amyloid beta-PeptidesMolecular Dynamics SimulationProtein Processing, Post-TranslationalPyrrolidonecarboxylic AcidAlzheimer DiseaseHumansHydrophobic and Hydrophilic InteractionsPeptide FragmentsProtein ConformationStatic ElectricityAmyloid beta-PeptidesPeptide FragmentsPyrrolidonecarboxylic AcidAlzheimer's diseaseamyloid‐βDrude oscillatorpolarizable molecular dynamics simulationspost‐translational modificationspyroglutamate

Identifiers

PMID38436541
PMCPMC11147713
OpenAlexW4392376125

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.