Evidence map›Paper›PMID 38433294›Full record

ArticleClinical and experimental dental research2024

Intracanal microbiome profiles of two apical periodontitis cases in one patient: A comparison with saliva and plaque profiles.

Keiko Yamaki, Toru Tamahara, Jumpei Washio, Takuichi Sato, Ritsuko Shimizu, Satoru Yamada

Open access · goldAbstract readCase Reports
In one paragraph

Article in Clinical and experimental dental research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Keiko YamakiDivision of Periodontology and Endodontology, Graduate School of Dentistry, Tohoku University, Sendai, Japan.ORCID 0000-0002-3301-3364
Toru TamaharaTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.ORCID 0000-0003-1640-7094
Jumpei WashioDivision of Oral Ecology and Biochemistry, Graduate School of Dentistry, Tohoku University, Sendai, Japan.ORCID 0000-0003-3196-557X
Takuichi SatoDivision of Clinical Chemistry, Graduate School of Health Sciences, Niigata University, Niigata, Japan.ORCID 0000-0002-6444-1193
Ritsuko ShimizuTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.ORCID 0000-0001-6672-7606
Satoru YamadaDivision of Periodontology and Endodontology, Graduate School of Dentistry, Tohoku University, Sendai, Japan.ORCID 0000-0001-7825-1481
Tohoku University · JPNiigata University · JP

Funding

Japan Society for the Promotion of Science JP17K11698 and JP21K17208
6 · The paper itself

Abstract

objectivesTo determine the characteristics of the endodontic microbiome. MATERIAL AND

methodsSaliva, plaque, and infected root canal wall dentin of two teeth suffering from apical periodontitis were harvested from a 58-year-old man. Bacterial DNA was extracted from each sample, and 16S rRNA gene analysis targeting the V3-V4 region was conducted on the Illumina MiSeq platform using QIIME2. The functional potential of the microbiomes was inferred using PICRUSt2.

resultsThe four microbiomes were different in structure and membership, yet the nine most abundant metabolic pathways were common among them. The two endodontic microbiomes were more anaerobic, rich in Firmicutes, and scarce in Actinobacteriota and Proteobacteria, compared with saliva and plaque microbiomes. Their profiles were dissimilar despite their clinical and radiographic similarities.

conclusionsThe endodontic microbiomes were anaerobic, rich in Firmicutes, scarce in Actinobacteriota and Proteobacteria, and considerably varied within an individual.

Indexed as

Dental PlaqueMicrobiotaPeriapical PeriodontitisHumansMaleMiddle AgedRNA, Ribosomal, 16SSalivaRNA, Ribosomal, 16S16S rRNA gene analysisapical periodontitisendodontic microbiomeroot canal

Identifiers

PMID38433294
PMCPMC10909803
OpenAlexW4392371783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.