Evidence map›Paper›PMID 38433158›Full record

ArticleEnvironmental geochemistry and health2024

Actinobacterial peroxidase-mediated biodeterioration of hazardous explosive, 2, 4, 6, trinitrophenol by in silico and in vitro approaches.

Prasath Sai Preethi, N M Hariharan, Shanmugam Dilip Kumar, Manian Rameshpathy, Ramasamy Subbaiya, Natchimuthu Karmegam

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In one paragraph

Article in Environmental geochemistry and health, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Prasath Sai PreethiDepartment of Biotechnology, Sree Sastha Institute of Engineering and Technology, Chennai, Tamil Nadu, 600123, India.ORCID http://orcid.org/0000-0001-8305-487X
N M HariharanDepartment of Biotechnology, Sree Sastha Institute of Engineering and Technology, Chennai, Tamil Nadu, 600123, India.ORCID http://orcid.org/0000-0002-5871-3113
Shanmugam Dilip KumarCentre for Nanoscience and Nanotechnology, Sathyabama Institute of Science and Technology, Chennai, Tamil Nadu, 600 119, India.ORCID http://orcid.org/0000-0001-8978-5833
Manian RameshpathySchool of Bio Sciences and Technology, Vellore Institute of Technology (VIT), Vellore, Tamil Nadu, 632014, India. kanishkarmegam@gmail.com.ORCID http://orcid.org/0000-0003-4967-0171
Ramasamy SubbaiyaDepartment of Biological Sciences, School of Mathematics and Natural Sciences, The Copperbelt University, Riverside, Jambo Drive, P O Box 21692, Kitwe, Zambia.ORCID http://orcid.org/0000-0002-4694-8791
Natchimuthu KarmegamPG and Research Department of Botany, Government Arts College (Autonomous), Salem, Tamil Nadu, 636 007, India. mrameshpathy@vit.ac.in.ORCID http://orcid.org/0000-0002-7955-3593
Copperbelt University · ZMGovernment of Tamil Nadu · INSathyabama Institute of Science and Technology · INVellore Institute of Technology University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Explosives are perilous and noxious to aquatic biota disrupting their endocrinal systems. Supplementarily, they exhibit carcinogenic, teratogenic and mutagenic effects on humans and animals. Henceforth, the current study has been targeted to biotransform the explosive, 2, 4, 6 trinitrophenol (TNP) by wetland peroxidase from Streptomyces coelicolor. A total peroxidase yield of 20,779 mg/l with 51.6 folds of purification was observed. In silico molecular docking cum in vitro appraisals were accomplished to assess binding energy and interacting binding site residues of peroxidase and TNP complex. TNP required a minimal binding energy of-6.91 kJ/mol and was subjected to biodeterioration (89.73%) by peroxidase in purified form, with 45 kDa and a similarity score of 34 by MASCOT protein analysis. Moreover, the peroxidase activity was confirmed with Zymogram analysis. Characterization of peroxidase revealed that optimum values of pH and temperature as 6 and 40 °C, respectively, with their corresponding stability varying from 3.5 to 7. Interestingly, the kinetic parameters such as K

Indexed as

BenzothiazolesHydrogen PeroxidePeroxidasePicratesSulfonic AcidsAnimalsColoring AgentsHumansMolecular Docking SimulationPeroxidases2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acidBenzothiazolesColoring AgentsHydrogen PeroxidePeroxidasePeroxidasesPicratespicric acidSulfonic AcidsBiodegradationComputational dockingEndocrine disruptorsGreen EarthPeroxidasesStreptomyces coelicolor

Identifiers

PMID38433158
OpenAlexW4392402072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.