Evidence map›Paper›PMID 38432632›Full record

ArticleThe Journal of biological chemistry2024

High-throughput virtual search of small molecules for controlling the mechanical stability of human CD4.

Antonio Reifs, Alba Fernandez-Calvo, Borja Alonso-Lerma, Jörg Schönfelder, David Franco, Mariano Ortega-Muñoz, Salvador Casares, Concepcion Jimenez-Lopez, Laura Saa, Aitziber L Cortajarena and 3 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Antonio ReifsCenter for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio-Bizkaia, Spain.
Alba Fernandez-CalvoCenter for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio-Bizkaia, Spain.
Borja Alonso-LermaCenter for Cooperative Research in Nanoscience (CIC nanoGUNE), Basque Research and Technology Alliance (BRTA), Donostia-San Sabestian, Spain.
Jörg SchönfelderCenter for Cooperative Research in Nanoscience (CIC nanoGUNE), Basque Research and Technology Alliance (BRTA), Donostia-San Sabestian, Spain.
David FrancoGlaxosmithkline, Rixensart, Belgium.
Mariano Ortega-MuñozFaculty of Science, Department of Organic Chemistry, University of Granada, Granada, Spain.
Salvador CasaresFaculty of Science, Department of Physical Chemistry, University of Granada, Granada, Spain.
Concepcion Jimenez-LopezDepartment of Microbiology, University of Granada, Granada, Spain.
Laura SaaCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Donostia-San Sebastian, Spain.
Aitziber L CortajarenaCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Donostia-San Sebastian, Spain; Ikerbasque, Basque Foundation for Science, Bilbao, Spain.
David De SanchoDonostia International Physics Center (DIPC), San Sebastian, Spain; Faculty of Chemistry, Applied Chemistry Department, University of the Basque Country (UPV/EHU), San Sebastian, Spain.
Eider San SebastianFaculty of Chemistry, Applied Chemistry Department, University of the Basque Country (UPV/EHU), San Sebastian, Spain. Electronic address: eider.sansebastian@ehu.eus.
Raul Perez-JimenezCenter for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio-Bizkaia, Spain; Ikerbasque, Basque Foundation for Science, Bilbao, Spain. Electronic address: raulpjc@cicbiogune.es.
Universidad de Granada · ESCIC bioGUNE · ESCIC nanoGUNE · ESIkerbasque · ESUniversity of the Basque Country · ESCIC biomaGUNE · ESGlaxoSmithKline (Belgium) · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein mechanical stability determines the function of a myriad of proteins, especially proteins from the extracellular matrix. Failure to maintain protein mechanical stability may result in diseases and disorders such as cancer, cardiomyopathies, or muscular dystrophy. Thus, developing mutation-free approaches to enhance and control the mechanical stability of proteins using pharmacology-based methods may have important implications in drug development and discovery. Here, we present the first approach that employs computational high-throughput virtual screening and molecular docking to search for small molecules in chemical libraries that function as mechano-regulators of the stability of human cluster of differentiation 4, receptor of HIV-1. Using single-molecule force spectroscopy, we prove that these small molecules can increase the mechanical stability of CD4D1D2 domains over 4-fold in addition to modifying the mechanical unfolding pathways. Our experiments demonstrate that chemical libraries are a source of mechanoactive molecules and that drug discovery approaches provide the foundation of a new type of molecular function, that is, mechano-regulation, paving the way toward mechanopharmacology.

Indexed as

CD4 AntigensDrug DiscoverySmall Molecule LibrariesHigh-Throughput Screening AssaysHIV-1HumansMolecular Docking SimulationProtein StabilityCD4 AntigensSmall Molecule Librariescluster of differentiation 4 (CD4)molecular dockingprotein–drug interactionprotein mechanicssmall molecule

Identifiers

PMID38432632
PMCPMC11065764
OpenAlexW4392345801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.