Evidence map›Paper›PMID 38431617›Full record

ArticleNature communications2024

RTF2 controls replication repriming and ribonucleotide excision at the replisome.

Brooke A Conti, Penelope D Ruiz, Cayla Broton, Nicolas J Blobel, Molly C Kottemann, Sunandini Sridhar, Francis P Lach, Tom F Wiley, Nanda K Sasi, Thomas Carroll and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 5 citations in OpenAlex.

  1. Detection ofInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Brooke A Conti *Laboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.
Penelope D Ruiz *Laboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0003-2904-5432
Cayla Broton *Laboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0001-6651-8724
Nicolas J BlobelLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0003-1027-3988
Molly C KottemannLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.
Sunandini SridharLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0002-6991-1860
Francis P LachLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.
Tom F WileyLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA.
Nanda K SasiLaboratory for Cell Biology and Genetics, The Rockefeller University, New York, NY, 10065, USA.
Thomas CarrollBioinformatics, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0002-0073-1714
Agata SmogorzewskaLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, 10065, USA. asmogorzewska@rockefeller.edu.ORCID 0000-0001-6285-1562
Rockefeller University · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Genetics and Cell BiologyT32GM066699 · NIGMS · ROCKEFELLER UNIVERSITY · PI STRICKLAND, SIDNEY · 2004 to 2021
$7.6M
Understanding Replication Stress Response in Mammalian CellsR01GM140400 · NIGMS · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2021 to 2024
$1.4M
Mechanisms of genomic instability, tumor initiation and progression following the disruption of the RTF2-RNase H2 axisF30CA268717 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLOBEL, NICOLAS JOHANNES · 2022 to 2025
$213k
Understanding the regulatory mechanisms for Replication Termination Factor 2 (RTF2) removal and function during DNA replicationF32GM143866 · NIGMS · ROCKEFELLER UNIVERSITY · PI RUIZ, PENELOPE LEE · 2021 to 2022
$136k
NCI NIH HHS F30 CA268717NIGMS NIH HHS F32 GM143866NIGMS NIH HHS R01 GM140400NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32 GM066699
6 · The paper itself

Abstract

DNA replication through a challenging genomic landscape is coordinated by the replisome, which must adjust to local conditions to provide appropriate replication speed and respond to lesions that hinder its progression. We have previously shown that proteasome shuttle proteins, DNA Damage Inducible 1 and 2 (DDI1/2), regulate Replication Termination Factor 2 (RTF2) levels at stalled replisomes, allowing fork stabilization and restart. Here, we show that during unperturbed replication, RTF2 regulates replisome localization of RNase H2, a heterotrimeric enzyme that removes RNA from RNA-DNA heteroduplexes. RTF2, like RNase H2, is essential for mammalian development and maintains normal replication speed. However, persistent RTF2 and RNase H2 at stalled replication forks prevent efficient replication restart, which is dependent on PRIM1, the primase component of DNA polymerase α-primase. Our data show a fundamental need for RTF2-dependent regulation of replication-coupled ribonucleotide removal and reveal the existence of PRIM1-mediated direct replication restart in mammalian cells.

Indexed as

DNADNA ReplicationAnimalsCell Cycle ProteinsDNA DamageMammalsRibonucleasesRNACell Cycle ProteinsDNARibonucleasesRNA

Identifiers

PMID38431617
PMCPMC10908796
OpenAlexW4392348878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.