Evidence map›Paper›PMID 38430446›Full record

ArticleArchives of virology2024

Complete genome sequence of a novel partitivirus with a dsRNA3 segment, isolated from Fusarium commune strain CP-SX-3 causing strawberry root rot.

Yumeng Zhao, Xinyi Zhang, Tongyu Mu, Xuehong Wu

Abstract read
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In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yumeng ZhaoDepartment of Plant Pathology, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Xinyi ZhangDepartment of Plant Pathology, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Tongyu MuDepartment of Plant Pathology, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Xuehong WuDepartment of Plant Pathology, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China. wuxuehong@cau.edu.cn.ORCID http://orcid.org/0000-0003-2669-2300
China Agricultural University · CNInstitute of Pomology · CN

Funding

Beijing Innovation Consortium of Special Crops Research System BAIC04-2023
6 · The paper itself

Abstract

A novel partitivirus, Fusarium commune partitivirus 1 (FcoPV1), was identified in Fusarium commune strain CP-SX-3 isolated from diseased roots of strawberry with symptoms of root rot. The complete genome of FcoPV1 comprises three double-stranded RNAs (dsRNAs): dsRNA1 (1,825 nt), dsRNA2 (1,592 nt), and dsRNA3 (1,421 nt). dsRNA1 contains a single open reading frame (ORF1) encoding an RNA-dependent RNA polymerase (RdRp), and dsRNA2 contains a single ORF (ORF2) encoding a coat protein (CP). dsRNA3 is a possible satellite RNA that does not appear to encode a known protein. BLASTp analysis revealed that RdRp (86.59%) and CP (74.13%) encoded by the two ORFs (ORF1 and ORF2) had the highest sequence similarity to their counterparts in Fusarium equiseti partitivirus 1 (FePV1). Phylogenetic analysis based on the complete amino acid sequence of RdRp suggested that FcoPV1 should be considered a member of a new species in the proposed genus "Zetapartitivirus" within the family Partitiviridae. To the best of our knowledge, this is the first report of a zetapartitivirus infecting phytopathogenic F. commune.

Indexed as

FragariaFusariumGenome, ViralPhylogenyRNA-Dependent RNA PolymeraseRNA-Dependent RNA PolymeraseCoat proteinGenome sequencePhylogenetic analysisRNA-dependent RNA polymeraseZetapartitivirus

Identifiers

PMID38430446
OpenAlexW4392346370

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.