Evidence map›Paper›PMID 38430276›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2024

Pathogen lifestyle determines host genetic signature of quantitative disease resistance loci in oilseed rape (Brassica napus).

Catherine N Jacott, Henk-Jan Schoonbeek, Gurpinder Singh Sidhu, Burkhard Steuernagel, Rachel Kirby, Xiaorong Zheng, Andreas von Tiedermann, Violetta K Macioszek, Andrzej K Kononowicz, Heather Fell and 5 more

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Catherine N JacottCrop Genetics Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0002-4285-0228
Henk-Jan SchoonbeekCrop Genetics Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0002-1087-2553
Gurpinder Singh SidhuComputational and Systems Biology Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0009-0002-7905-8055
Burkhard SteuernagelComputational and Systems Biology Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0002-8284-7728
Rachel KirbyCrop Genetics Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Xiaorong ZhengDepartment of Crop Sciences, Georg August University, 37077, Göttingen, Germany.ORCID http://orcid.org/0000-0002-1369-8669
Andreas von TiedermannDepartment of Crop Sciences, Georg August University, 37077, Göttingen, Germany.ORCID http://orcid.org/0000-0002-1085-9607
Violetta K MacioszekDepartment of Biology and Plant Ecology, Faculty of Biology, University of Bialystok, 15-245, Białystok, Poland.ORCID http://orcid.org/0000-0002-5143-4226
Andrzej K KononowiczDepartment of Plant Ecophysiology, Faculty of Biology and Environmental Protection, University of Lodz, 90-237, Lodz, Poland.ORCID http://orcid.org/0000-0001-9950-5102
Heather FellCentre for Agriculture, Food and Environmental Management Research, School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire, AL10 9AB, UK.
Bruce D L FittCentre for Agriculture, Food and Environmental Management Research, School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire, AL10 9AB, UK.ORCID http://orcid.org/0000-0003-3981-6456
Georgia K MitrousiaCentre for Agriculture, Food and Environmental Management Research, School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire, AL10 9AB, UK.ORCID http://orcid.org/0000-0002-5960-6555
Henrik U StotzCentre for Agriculture, Food and Environmental Management Research, School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire, AL10 9AB, UK.ORCID http://orcid.org/0000-0003-2954-8566
Christopher J RidoutCrop Genetics Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0001-9287-938X
Rachel WellsCrop Genetics Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. rachel.wells@jic.ac.uk.ORCID http://orcid.org/0000-0002-1280-7472
John Innes Centre · GBUniversity of Hertfordshire · GBUniversity of Göttingen · DEUniversity of Białystok · PLUniversity of Łódź · PL

Funding

Biotechnology and Biological Sciences Research Council BB/N005007/1Biotechnology and Biological Sciences Research Council BB/N005112/1Biotechnology and Biological Sciences Research Council BB/P003095/1Biotechnology and Biological Sciences Research Council BB/P012523/1Biotechnology and Biological Sciences Research Council BB/P012574/1Biotechnology and Biological Sciences Research Council BB/P013511/1Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9796
6 · The paper itself

Abstract

key messageUsing associative transcriptomics, our study identifies genes conferring resistance to four diverse fungal pathogens in crops, emphasizing key genetic determinants of multi-pathogen resistance. Crops are affected by several pathogens, but these are rarely studied in parallel to identify common and unique genetic factors controlling diseases. Broad-spectrum quantitative disease resistance (QDR) is desirable for crop breeding as it confers resistance to several pathogen species. Here, we use associative transcriptomics (AT) to identify candidate gene loci associated with Brassica napus constitutive QDR to four contrasting fungal pathogens: Alternaria brassicicola, Botrytis cinerea, Pyrenopeziza brassicae, and Verticillium longisporum. We did not identify any shared loci associated with broad-spectrum QDR to fungal pathogens with contrasting lifestyles. Instead, we observed QDR dependent on the lifestyle of the pathogen-hemibiotrophic and necrotrophic pathogens had distinct QDR responses and associated loci, including some loci associated with early immunity. Furthermore, we identify a genomic deletion associated with resistance to V. longisporum and potentially broad-spectrum QDR. This is the first time AT has been used for several pathosystems simultaneously to identify host genetic loci involved in broad-spectrum QDR. We highlight constitutive expressed candidate loci for broad-spectrum QDR with no antagonistic effects on susceptibility to the other pathogens studies as candidates for crop breeding. In conclusion, this study represents an advancement in our understanding of broad-spectrum QDR in B. napus and is a significant resource for the scientific community.

Indexed as

Brassica napusDisease ResistancePlant Breeding

Identifiers

PMID38430276
PMCPMC10908622
OpenAlexW4392346926

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.