Evidence map›Paper›PMID 38429292›Full record

ArticleNature communications2024

Protein NirP1 regulates nitrite reductase and nitrite excretion in cyanobacteria.

Alexander Kraus, Philipp Spät, Stefan Timm, Amy Wilson, Rhena Schumann, Martin Hagemann, Boris Maček, Wolfgang R Hess

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Deciphering guanidine assimilation and riboswitch-based gene regulation in cyanobacteria for synthetic biology applications.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Review
  7. Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
    Article
  8. Electron transfer in biological systems.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Alexander KrausGenetics and Experimental Bioinformatics, Faculty of Biology, Freiburg University, D-79104, Freiburg, Germany.
Philipp SpätDepartment of Quantitative Proteomics, Interfaculty Institute for Cell Biology, University of Tübingen, D-72076, Tübingen, Germany.ORCID 0000-0001-6349-099X
Stefan TimmPlant Physiology Department, Institute of Biosciences, University of Rostock, D-18059, Rostock, Germany.ORCID 0000-0003-3105-6296
Amy WilsonGenetics and Experimental Bioinformatics, Faculty of Biology, Freiburg University, D-79104, Freiburg, Germany.
Rhena SchumannBiological Station Zingst, University of Rostock, D-18374, Zingst, Germany.ORCID 0000-0002-0605-3379
Martin HagemannPlant Physiology Department, Institute of Biosciences, University of Rostock, D-18059, Rostock, Germany.ORCID 0000-0002-2059-2061
Boris MačekDepartment of Quantitative Proteomics, Interfaculty Institute for Cell Biology, University of Tübingen, D-72076, Tübingen, Germany.ORCID 0000-0002-1206-2458
Wolfgang R HessGenetics and Experimental Bioinformatics, Faculty of Biology, Freiburg University, D-79104, Freiburg, Germany. wolfgang.hess@biologie.uni-freiburg.de.ORCID 0000-0002-5340-3423
University of Freiburg · DEUniversity of Rostock · DEUniversity of Tübingen · DE

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) HA 2002/23-2Deutsche Forschungsgemeinschaft (German Research Foundation) HE 2544/15-2
6 · The paper itself

Abstract

When the supply of inorganic carbon is limiting, photosynthetic cyanobacteria excrete nitrite, a toxic intermediate in the ammonia assimilation pathway from nitrate. It has been hypothesized that the excreted nitrite represents excess nitrogen that cannot be further assimilated due to the missing carbon, but the underlying molecular mechanisms are unclear. Here, we identified a protein that interacts with nitrite reductase, regulates nitrogen metabolism and promotes nitrite excretion. The protein, which we named NirP1, is encoded by an unannotated gene that is upregulated under low carbon conditions and controlled by transcription factor NtcA, a central regulator of nitrogen homeostasis. Ectopic overexpression of nirP1 in Synechocystis sp. PCC 6803 resulted in a chlorotic phenotype, delayed growth, severe changes in amino acid pools, and nitrite excretion. Coimmunoprecipitation experiments indicated that NirP1 interacts with nitrite reductase, a central enzyme in the assimilation of ammonia from nitrate/nitrite. Our results reveal that NirP1 is widely conserved in cyanobacteria and plays a crucial role in the coordination of C/N primary metabolism by targeting nitrite reductase.

Indexed as

NitritesSynechocystisAmmoniaBacterial ProteinsCarbonGene Expression Regulation, BacterialNitrate ReductaseNitratesNitrite ReductasesNitrogenAmmoniaBacterial ProteinsCarbonNitrate ReductaseNitratesNitrite ReductasesNitritesNitrogen

Identifiers

PMID38429292
PMCPMC10907346
OpenAlexW4392387309

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.