Evidence map›Paper›PMID 38428410›Full record

ArticleCancer cell2024

Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients.

Andrea J Radtke, Ekaterina Postovalova, Arina Varlamova, Alexander Bagaev, Maria Sorokina, Olga Kudryashova, Mark Meerson, Margarita Polyakova, Ilia Galkin, Viktor Svekolkin and 31 more

Open access · greenAbstract read
In one paragraph

Article in Cancer cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
22.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 54 citations in OpenAlex.

  1. Trial
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  7. Spatiotemporal dynamics of adoptively transferred stem-like CD8bioRxiv : the preprint server for biology · 2026
    Article
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  10. Review
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  15. CIMT 2025: Report on the 22Human vaccines & immunotherapeutics · 2025
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Goodbye flat lymphoma biology.FEBS letters · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 9 institutions in 2 countries.

Andrea J RadtkeLymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD 20892, USA. Electronic address: andrea.radtke@nih.gov.
Ekaterina PostovalovaBostonGene, Waltham, MA 02453, USA.
Arina VarlamovaBostonGene, Waltham, MA 02453, USA.
Alexander BagaevBostonGene, Waltham, MA 02453, USA.
Maria SorokinaBostonGene, Waltham, MA 02453, USA.
Olga KudryashovaBostonGene, Waltham, MA 02453, USA.
Mark MeersonBostonGene, Waltham, MA 02453, USA.
Margarita PolyakovaBostonGene, Waltham, MA 02453, USA.
Ilia GalkinBostonGene, Waltham, MA 02453, USA.
Viktor SvekolkinBostonGene, Waltham, MA 02453, USA.
Sergey IsaevBostonGene, Waltham, MA 02453, USA.
Daniil WiebeBostonGene, Waltham, MA 02453, USA.
Anna SharunBostonGene, Waltham, MA 02453, USA.
Alexander SarachakovBostonGene, Waltham, MA 02453, USA.
Grigory PerelmanBostonGene, Waltham, MA 02453, USA.
Yaroslav LozinskyBostonGene, Waltham, MA 02453, USA.
Ziv YanivBioinformatics and Computational Bioscience Branch, NIAID, NIH, Bethesda, MD 20892, USA.
Bradley C LowekampBioinformatics and Computational Bioscience Branch, NIAID, NIH, Bethesda, MD 20892, USA.
Emily SperanzaLymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD 20892, USA; Florida Research and Innovation Center, Cleveland Clinic Lerner Research Institute, Port Saint Lucie, FL 34987, USA.
Li YaoLi Yao Visuals, Rockville, MD 20855, USA.
Stefania PittalugaLaboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.
Arthur L ShafferLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA; Tumor Targeted Delivery, Heme Malignancy Target Discovery Group, AstraZeneca, Gaithersburg, MD 20878, USA.
Danny JonigkInstitute of Pathology, Aachen Medical University, RWTH Aachen, 52074 Aachen, Germany; German Center for Lung Research (DZL), Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), 30625 Hannover, Germany.
James D PhelanLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.
Theresa Davies-HillLaboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.
Da Wei HuangLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.
Pavel OvcharovBostonGene, Waltham, MA 02453, USA.
Krystle NomieBostonGene, Waltham, MA 02453, USA.
Ekaterina NuzhdinaBostonGene, Waltham, MA 02453, USA.
Nikita KotlovBostonGene, Waltham, MA 02453, USA.
Ravshan AtaullakhanovBostonGene, Waltham, MA 02453, USA.
Nathan FowlerBostonGene, Waltham, MA 02453, USA.
Michael KellyCCR Single Analysis Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Bethesda, MD 20892, USA.
Jagan MuppidiLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.
Jeremy L DavisSurgical Oncology Program, Metastasis Biology Section, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Jonathan M HernandezSurgical Oncology Program, Metastasis Biology Section, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Wyndham H WilsonLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.
Elaine S JaffeLaboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.
Louis M StaudtLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.
Mark RoschewskiLymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.
Ronald N GermainLymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD 20892, USA.
Addgene · USNational Institutes of Health · USNational Cancer Institute · USAdvanced Tissue (United States) · USCleveland Clinic · USFrederick National Laboratory for Cancer Research · USMedizinische Hochschule Hannover · DEOffice of Extramural Research · USVisual Editor Consultants (United States) · US

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Multiscale Analysis of Immune ResponsesZIAAI000545 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI GERMAIN, RONALD N · 2009 to 2025
$29.4M
Molecular diagnosis and outcome prediction in lymphomaZIABC011006 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Interrogating the molecular underpinnings of metastatic colonizationZIABC011759 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HERNANDEZ, JONATHAN · 2017 to 2025
$18.9M
Surgical Oncology Program Training ProgramZIEBC012097 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BLAKELY, ANDREW · 2022 to 2025
$17.3M
Lymphoma Disease Discovery and DefintionZIASC000550 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$16.9M
The role of Galpha13 signaling in suppression of lymphomaZIABC011772 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MUPPIDI, JAGAN · 2017 to 2025
$12.1M
Therapeutic Strategies and Molecular Correlates in Aggressive B-cell LymphomasZIASC006741 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI WILSON, WYNDHAM H · 2009 to 2025
$10.4M
Single Cell Analysis FacilityZICBC012123 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KELLY, MICHAEL · 2022 to 2025
$7.3M
Molecular Biology of LymphomaZIABC011914 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ROSCHEWSKI, MARK · 2019 to 2025
$5.5M
Targeted treatment of B-cell LymphomaZIABC011354 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WILSON, WYNDHAM H · 2010 to 2025
$4.6M
Multiscale Analysis of Immune ResponsesZ01AI000545 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI GERMAIN, RONALD N · 1990 to 2008
$4.5M
Intramural NIH HHS Z01 AI000545Intramural NIH HHS Z01 BC011006Intramural NIH HHS Z01 SC004024Intramural NIH HHS ZIA BC011914NCI NIH HHS 75N91019D00024
6 · The paper itself

Abstract

Follicular lymphoma (FL) is a generally incurable malignancy that evolves from developmentally blocked germinal center (GC) B cells. To promote survival and immune escape, tumor B cells undergo significant genetic changes and extensively remodel the lymphoid microenvironment. Dynamic interactions between tumor B cells and the tumor microenvironment (TME) are hypothesized to contribute to the broad spectrum of clinical behaviors observed among FL patients. Despite the urgent need, existing clinical tools do not reliably predict disease behavior. Using a multi-modal strategy, we examined cell-intrinsic and -extrinsic factors governing progression and therapeutic outcomes in FL patients enrolled onto a prospective clinical trial. By leveraging the strengths of each platform, we identify several tumor-specific features and microenvironmental patterns enriched in individuals who experience early relapse, the most high-risk FL patients. These features include stromal desmoplasia and changes to the follicular growth pattern present 20 months before first progression and first relapse.

Indexed as

Lymphoma, FollicularB-LymphocytesClinical Trials as TopicHumansMultiomicsProspective StudiesRecurrenceTumor MicroenvironmentB cell lymphomacancer-associated fibroblastshuman lymph nodeimmunologyintegrated analysismulti-omic single-cell atlasRNA-seqspatial proteomicstumor microenvironmenttumor progression

Identifiers

PMID38428410
PMCPMC10966827
OpenAlexW4392302566

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.