Evidence map›Paper›PMID 38425914›Full record

ArticleJACS Au2024

Exploring the Landscape of Aptamers: From Cross-Reactive to Selective to Specific, High-Affinity Receptors for Cocaine.

Kyungae Yang, Obtin Alkhamis, Juan Canoura, Alexandra Bryant, Edward M Gong, Mihaela Barbu, Steven Taylor, Dragan Nikic, Saswata Banerjee, Yi Xiao and 2 more

Open access · goldAbstract read
In one paragraph

Article in JACS Au, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Kyungae YangDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.ORCID https://orcid.org/0000-0001-5575-4107
Obtin AlkhamisDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Juan CanouraDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Alexandra BryantDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Edward M GongDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.
Mihaela BarbuDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.
Steven TaylorDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.ORCID https://orcid.org/0000-0002-9810-4531
Dragan NikicDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.
Saswata BanerjeeDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.
Yi XiaoDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.ORCID https://orcid.org/0000-0001-7278-9811
Milan N StojanovicDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.
Donald W LandryDepartment of Medicine, Columbia University Irving Medical Center, New York, New York 10032, United States.
Columbia University Irving Medical Center · USNorth Carolina State University · US

Funding

Analog-based Approaches to Isolation of Aptamers for Challenging TargetsR01GM138843 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STOJANOVIC, MILAN N · 2020 to 2023
$2.3M
NIGMS NIH HHS R01 GM138843
6 · The paper itself

Abstract

We reported over 20 years ago MNS-4.1, the first DNA aptamer with a micromolar affinity for cocaine. MNS-4.1 is based on a structural motif that is very common in any random pool of oligonucleotides, and it is actually a nonspecific hydrophobic receptor with wide cross-reactivity with alkaloids and steroids. Despite such weaknesses preventing broad applications, this aptamer became widely used in proof-of-concept demonstrations of new formats of biosensors. We now report a series of progressively improved DNA aptamers recognizing cocaine, with the final optimized receptors having low nanomolar affinity and over a thousand-fold selectivity over the initial cross-reactants. In the process of optimization, we tested different methods to eliminate cross-reactivities and improve affinity, eventually achieving properties that are comparable to those of the reported monoclonal antibody candidates for the therapy of overdose. Multiple aptamers that we now report share structural motifs with the previously reported receptor for serotonin. Further mutagenesis studies revealed a palindromic, highly adaptable, broadly cross-reactive hydrophobic motif that could be rebuilt through mutagenesis, expansion of linker regions, and selections into receptors with exceptional affinities and varying specificities.

Identifiers

PMID38425914
PMCPMC10900216
OpenAlexW4391771818

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.