Evidence map›Paper›PMID 38425478›Full record

ArticleISME communications2024

High amino acid osmotrophic incorporation by marine eukaryotic phytoplankton revealed by click chemistry.

Catalina Mena, Ona Deulofeu-Capo, Irene Forn, Júlia Dordal-Soriano, Yulieth A Mantilla-Arias, Iván P Samos, Marta Sebastián, Clara Cardelús, Ramon Massana, Cristina Romera-Castillo and 3 more

Open access · goldAbstract read
In one paragraph

Article in ISME communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Catalina MenaDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Ona Deulofeu-CapoDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Irene FornDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Júlia Dordal-SorianoDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Yulieth A Mantilla-AriasDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Iván P SamosDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Marta SebastiánDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Clara CardelúsDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Ramon MassanaDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Cristina Romera-CastilloDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Rebeca Mallenco-ForniesDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Josep M GasolDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Clara Ruiz-GonzálezDepartment of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona 08003, Spain.
Institut Català de Ciències del Clima · ESInstitut de Ciències del Mar · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The osmotrophic uptake of dissolved organic compounds in the ocean is considered to be dominated by heterotrophic prokaryotes, whereas the role of planktonic eukaryotes is still unclear. We explored the capacity of natural eukaryotic plankton communities to incorporate the synthetic amino acid L-homopropargylglycine (HPG, analogue of methionine) using biorthogonal noncanonical amino acid tagging (BONCAT), and we compared it with prokaryotic HPG use throughout a 9-day survey in the NW Mediterranean. BONCAT allows to fluorescently identify translationally active cells, but it has never been applied to natural eukaryotic communities. We found a large diversity of photosynthetic and heterotrophic eukaryotes incorporating HPG into proteins, with dinoflagellates and diatoms showing the highest percentages of BONCAT-labelled cells (49 ± 25% and 52 ± 15%, respectively). Among them, pennate diatoms exhibited higher HPG incorporation in the afternoon than in the morning, whereas small (≤5 μm) photosynthetic eukaryotes and heterotrophic nanoeukaryotes showed the opposite pattern. Centric diatoms (e.g.

Indexed as

BONCATclick chemistrydiatomseukaryotic communitiesHPGmarine ecologymixotrophyosmotrophysingle-cell microbiology

Identifiers

PMID38425478
PMCPMC10902890
OpenAlexW4390972897

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.