Evidence map›Paper›PMID 38424461›Full record

ArticleNature genetics2024

A combinatorial genetic strategy for exploring complex genotype-phenotype associations in cancer.

Shan Li, Alicia Wong, Huiyun Sun, Vipul Bhatia, Gerardo Javier, Sujata Jana, Qian Wu, Robert B Montgomery, Jonathan L Wright, Hung-Ming Lam and 4 more

Abstract read
In one paragraph

Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  3. Review
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  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Shan Li *Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Alicia Wong *Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Huiyun Sun *Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Vipul BhatiaHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Gerardo JavierHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Sujata JanaHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-2718-0307
Qian WuClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Robert B MontgomeryDivision of Medical Oncology, University of Washington School of Medicine, Seattle, WA, USA.
Jonathan L WrightDepartment of Urology, University of Washington School of Medicine, Seattle, WA, USA.
Hung-Ming LamDepartment of Urology, University of Washington School of Medicine, Seattle, WA, USA.
Andrew C HsiehHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-0897-1050
Bishoy M FaltasSandra and Edward Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-6432-1693
Michael C HaffnerHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
John K LeeHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA. jklee5@fredhutch.org.ORCID http://orcid.org/0000-0002-6570-2180

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
Uncovering diverse genotype-phenotype relationships in prostate cancerDP2CA271301 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LEE, JOHN KYUNG · 2021 to 2024
$3.4M
Hormone signaling and translation control in advanced prostate cancerR37CA230617 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSIEH, ANDREW CALEB · 2019 to 2025
$3.1M
Transcriptional-translational conflict in bladder epithelial homeostasis and cancerR01CA276308 · NCI · FRED HUTCHINSON CANCER CENTER · PI Andrew Caleb Hsieh · 2023 to 2026
$2.3M
NCI NIH HHS DP2 CA271301NCI NIH HHS P30 CA015704NCI NIH HHS P50 CA097186NCI NIH HHS R01 CA276308NCI NIH HHS R37 CA230617
6 · The paper itself

Abstract

Available genetically defined cancer models are limited in genotypic and phenotypic complexity and underrepresent the heterogeneity of human cancer. Here, we describe a combinatorial genetic strategy applied to an organoid transformation assay to rapidly generate diverse, clinically relevant bladder and prostate cancer models. Importantly, the clonal architecture of the resultant tumors can be resolved using single-cell or spatially resolved next-generation sequencing to uncover polygenic drivers of cancer phenotypes.

Indexed as

NeoplasmsGenetic Association StudiesGenotypeHumansMalePhenotype

Identifiers

PMID38424461
PMCPMC10937382

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.