Evidence map›Paper›PMID 38424057›Full record

ArticleNature communications2024

A c-di-GMP signaling module controls responses to iron in Pseudomonas aeruginosa.

Xueliang Zhan, Kuo Zhang, Chenchen Wang, Qiao Fan, Xiujia Tang, Xi Zhang, Ke Wang, Yang Fu, Haihua Liang

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  3. Article
  4. Review
  5. bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Review
  8. c-di-GMP is a key regulator of Pseudomonas aeruginosa response to UVA radiation.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
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  14. Transcriptional profiling ofFrontiers in microbiology · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. eATP sensing by the purinergic receptor PA2072 for allosteric modulation in intracellular c-di-GMP signaling.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Xueliang Zhan *College of Life Sciences, Northwest University, Xi'an, ShaanXi, China.
Kuo Zhang *College of Medicine, Southern University of Science and Technology, Shenzhen, China.
Chenchen Wang *College of Medicine, Southern University of Science and Technology, Shenzhen, China.ORCID 0000-0002-3618-1670
Qiao FanCollege of Life Sciences, Northwest University, Xi'an, ShaanXi, China.
Xiujia TangDepartment of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Xi ZhangCollege of Life Sciences, Northwest University, Xi'an, ShaanXi, China.
Ke WangDepartment of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Yang FuCollege of Medicine, Southern University of Science and Technology, Shenzhen, China.
Haihua LiangCollege of Medicine, Southern University of Science and Technology, Shenzhen, China. lianghh@sustech.edu.cn.ORCID 0000-0001-9639-1867
Southern University of Science and Technology · CNNorthwest University · CNGuangxi Medical University · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32170188
6 · The paper itself

Abstract

Cyclic dimeric guanosine monophosphate (c-di-GMP) serves as a bacterial second messenger that modulates various processes including biofilm formation, motility, and host-microbe symbiosis. Numerous studies have conducted comprehensive analysis of c-di-GMP. However, the mechanisms by which certain environmental signals such as iron control intracellular c-di-GMP levels are unclear. Here, we show that iron regulates c-di-GMP levels in Pseudomonas aeruginosa by modulating the interaction between an iron-sensing protein, IsmP, and a diguanylate cyclase, ImcA. Binding of iron to the CHASE4 domain of IsmP inhibits the IsmP-ImcA interaction, which leads to increased c-di-GMP synthesis by ImcA, thus promoting biofilm formation and reducing bacterial motility. Structural characterization of the apo-CHASE4 domain and its binding to iron allows us to pinpoint residues defining its specificity. In addition, the cryo-electron microscopy structure of ImcA in complex with a c-di-GMP analog (GMPCPP) suggests a unique conformation in which the compound binds to the catalytic pockets and to the membrane-proximal side located at the cytoplasm. Thus, our results indicate that a CHASE4 domain directly senses iron and modulates the crosstalk between c-di-GMP metabolic enzymes.

Indexed as

Bacterial ProteinsEscherichia coli ProteinsThionucleotidesBiofilmsCryoelectron MicroscopyCyclic GMPGene Expression Regulation, BacterialInosine MonophosphatePseudomonas aeruginosa5'-deoxy-5'-thioinosine 5'-monophosphateBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPEscherichia coli ProteinsInosine MonophosphateThionucleotides

Identifiers

PMID38424057
PMCPMC10904736
OpenAlexW4392297953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.