Evidence map›Paper›PMID 38423369›Full record

ArticleThe Journal of allergy and clinical immunology2024

Early-life nasal microbiota dynamics relate to longitudinal respiratory phenotypes in urban children.

Kathryn E McCauley, Juliana Durack, Kole V Lynch, Douglas W Fadrosh, Kei E Fujimura, Faith Vundla, Mustafa Özçam, Petra LeBeau, Agustin Caltroni, Preston Burns and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Microbial influencers: the airway microbiome's role in asthma.The Journal of clinical investigation · 2025
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 1 country.

Kathryn E McCauleyBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Juliana DurackBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Kole V LynchBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Douglas W FadroshBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Kei E FujimuraBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Faith VundlaBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Mustafa ÖzçamBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Petra LeBeauRho Federal Systems Division, Inc, Durham, NC.
Agustin CaltroniRho Federal Systems Division, Inc, Durham, NC.
Preston BurnsRho Federal Systems Division, Inc, Durham, NC.
Hoang T TranRho Federal Systems Division, Inc, Durham, NC.
Leonard B BacharierDivision of Allergy, Immunology and Pulmonary Medicine, Department of Pediatrics, Washington University School of Medicine in St Louis, St Louis, Mo.
Meyer KattanDepartment of Pediatrics, Columbia University, New York, NY.
George T O'ConnorDepartment of Medicine, Boston University School of Medicine, Boston, Mass.
Robert A WoodDepartments of Pediatrics and Allergy and Immunology, Johns Hopkins University, Baltimore, Md.
Alkis TogiasNational Institute of Allergy and Infectious Diseases, Bethesda, Md.
Homer A BousheyBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif.
Daniel J JacksonDepartment of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, Wis.
James E GernDepartment of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, Wis. Electronic address: gern@medicine.wisc.edu.
Susan V LynchBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, Calif. Electronic address: susan.lynch@ucsf.edu.
National Institute of Allergy and Infectious Diseases–sponsored Childhood Asthma in Urban Settings Consortium
University of California, San Francisco · USRho (United States) · USUniversity of Wisconsin–Madison · USBoston University · USColumbia University · USJohns Hopkins University · USNational Institute of Allergy and Infectious Diseases · USThermo Fisher Scientific (United States) · USWashington University in St. Louis · US

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Institute for Clinical and Translational ResearchUL1TR001079 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2013 to 2017
$60.1M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024156 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$53.0M
Washington University Institute of Clinical and Translational Sciences (UL1)UL1RR024992 · NCRR · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2007 to 2011
$45.4M
ZIPRASIDONE (GEODON) AUGMENTATION IN SEROTONIN REUPTAKE INHIBITOR-RESISTANT OBM01RR000071 · NCRR · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI KOLEVZON, ALEXANDER · 1985 to 2009
$41.5M
Childhood Asthma in Urban Settings Leadership Center Administrative Supplement for URECA Yr4UM1AI160040 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI James E. Gern, DANIEL J JACKSON · 2021 to 2026
$41.1M
ZINC AND CA EDTA THERAPY OF PLUMBISMM01RR000052 · NCRR · JOHNS HOPKINS UNIVERSITY · PI VINING, EILEEN PATRICE · 1985 to 2007
$37.3M
RhoFED AA-SCCCU01AI178772 · NIAID · RHO FEDERAL SYSTEMS DIVISION, INC. · PI Gloria David, Cynthia M Visness · 2023 to 2026
$37.2M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
YOGA INDUCED CHANGES IN BRAIN GABA LEVELSM01RR000533 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ANTMAN, KAREN · 1985 to 2008
$19.4M
Wisconsin Infant Study Cohort (WISC) ECHO Pediatric Follow-UpUG3OD023282 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI GERN, JAMES E. · 2016 to 2024
$19.3M
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1 TR001079NCATS NIH HHS UL1 TR001873NCATS NIH HHS UL1 TR002345NCRR NIH HHS M01 RR000052NCRR NIH HHS M01 RR000071NCRR NIH HHS M01 RR000533NCRR NIH HHS UL1 RR024156NCRR NIH HHS UL1 RR024992NCRR NIH HHS UL1 RR025771NIAID NIH HHS HHSN272200900052CNIAID NIH HHS HHSN272201000052INIAID NIH HHS U01 AI178772NIAID NIH HHS UM1 AI160040NIDDK NIH HHS T32 DK007762NIH HHS UG3 OD023282
6 · The paper itself

Abstract

backgroundFive distinct respiratory phenotypes based on latent classes of longitudinal patterns of wheezing, allergic sensitization. and pulmonary function measured in urban children from ages from 0 to 7 years have previously been described.

objectiveOur aim was to determine whether distinct respiratory phenotypes are associated with early-life upper respiratory microbiota development and environmental microbial exposures.

methodsMicrobiota profiling was performed using 16S ribosomal RNA-based sequencing of nasal samples collected at age 12 months (n = 120) or age 36 months (n = 142) and paired house dust samples collected at 3 months (12-month, n = 73; 36-month, n = 90) from all 4 centers in the Urban Environment and Childhood Asthma (URECA) cohort.

resultsIn these high-risk urban children, nasal microbiota increased in diversity between ages 12 and 36 months (ß = 2.04; P = .006). Age-related changes in microbiota evenness differed significantly by respiratory phenotypes (interaction P = .0007), increasing most in the transient wheeze group. At age 12 months, respiratory illness (R

conclusionNasal microbiota development over the course of early childhood and composition at age 3 years are associated with longitudinal respiratory phenotypes. These data provide evidence supporting an early-life window of airway microbiota development that is influenced by environmental microbial exposures in infancy and associates with wheeze- and atopy-associated respiratory phenotypes through age 7 years.

Indexed as

MicrobiotaPhenotypeRespiratory SoundsUrban PopulationAsthmaChildChild, PreschoolDustEnvironmental ExposureFemaleHumansInfantLongitudinal StudiesMaleNoseRNA, Ribosomal, 16SDustRNA, Ribosomal, 16Sairway microbiotaAsthmaatopyearly childhoodrespiratory phenotypes

Identifiers

PMID38423369
PMCPMC11162315
OpenAlexW4392786450

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.