Evidence map›Paper›PMID 38422982›Full record

ArticleEBioMedicine2024

Dynamic establishment of recipient resident memory T cell repertoire after human intestinal transplantation.

Wenyu Jiao, Mercedes Martinez, Constanza Bay Muntnich, Julien Zuber, Christopher Parks, Aleksandar Obradovic, Guangyao Tian, Zicheng Wang, Katherine D Long, Elizabeth Waffarn and 13 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Immunogenomic landscape of the T cell repertoire after human lung transplantation and its clinical relevance.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 2 countries.

Wenyu JiaoColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States; Department of Hepatobiliary and Pancreatic Surgery, General Surgery Center, The First Hospital of Jilin University, Jilin, China.
Mercedes MartinezDepartment of Pediatrics, Columbia University, New York, NY, United States.
Constanza Bay MuntnichColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Julien ZuberColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Christopher ParksColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Aleksandar ObradovicColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Guangyao TianDepartment of Hepatobiliary and Pancreatic Surgery, General Surgery Center, The First Hospital of Jilin University, Jilin, China.
Zicheng WangCenter for Computational Biology and Bioinformatics, Department of Systems Biology, Columbia University, New York, NY, United States.
Katherine D LongColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Elizabeth WaffarnColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Kristjana FrangajColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Rebecca JonesColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Alaka GorurColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Brittany ShontsColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Kortney RogersColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States.
Guoyue LvDepartment of Hepatobiliary and Pancreatic Surgery, General Surgery Center, The First Hospital of Jilin University, Jilin, China.
Monica VelascoSchool of Nursing, Columbia University, New York, NY, United States.
Shilpa RavellaDepartment of Medicine, Columbia University, New York, NY, United States.
Joshua WeinerColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States; Department of Surgery, Columbia University, New York, NY, United States.
Tomoaki KatoDepartment of Surgery, Columbia University, New York, NY, United States.
Yufeng ShenCenter for Computational Biology and Bioinformatics, Department of Systems Biology, Columbia University, New York, NY, United States.
Jianing FuColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States. Electronic address: jf2977@cumc.columbia.edu.
Megan SykesColumbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY, United States; Department of Surgery, Columbia University, New York, NY, United States; Department of Microbiology & Immunology, Columbia University, New York, NY, United States. Electronic address: megan.sykes@columbia.edu.
Columbia University · USJilin University · CNColumbia University Irving Medical Center · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Robert H. Vonderheide · 1985 to 2026
$222.3M
Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID S METZGER · 1999 to 2026
$78.6M
Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Multidisciplinary Training in Molecular and Translational Rheumatology ResearchT32AR076953 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BATHON, JOAN MARIE, WINCHESTER, ROBERT J · 2021 to 2025
$742k
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
Discovering Network-Based Drivers of Single-Cell Transcriptional State in Tumor Immune Microenvironment to Reveal Immuno-Therapeutic Targets and Treatment SynergiesF30CA260765 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI OBRADOVIC, ALEKSANDAR ZORAN · 2021 to 2022
$98k
NCI NIH HHS F30 CA260765NCI NIH HHS P30 CA016520NCRR NIH HHS S10 RR027050NIAID NIH HHS P01 AI106697NIAID NIH HHS P30 AI045008NIAMS NIH HHS T32 AR076953NIH HHS S10 OD020056
6 · The paper itself

Abstract

backgroundUnderstanding formation of the human tissue resident memory T cell (TRM) repertoire requires longitudinal access to human non-lymphoid tissues.

methodsBy applying flow cytometry and next generation sequencing to serial blood, lymphoid tissue, and gut samples from 16 intestinal transplantation (ITx) patients, we assessed the origin, distribution, and specificity of human TRMs at phenotypic and clonal levels.

findingsDonor age ≥1 year and blood T cell macrochimerism (peak level ≥4%) were associated with delayed establishment of stable recipient TRM repertoires in the transplanted ileum. T cell receptor (TCR) overlap between paired gut and blood repertoires from ITx patients was significantly greater than that in healthy controls, demonstrating increased gut-blood crosstalk after ITx. Crosstalk with the circulating pool remained high for years of follow-up. TCR sequences identifiable in pre-Tx recipient gut but not those in lymphoid tissues alone were more likely to populate post-Tx ileal allografts. Clones detected in both pre-Tx gut and lymphoid tissue had distinct transcriptional profiles from those identifiable in only one tissue. Recipient T cells were distributed widely throughout the gut, including allograft and native colon, which had substantial repertoire overlap. Both alloreactive and microbe-reactive recipient T cells persisted in transplanted ileum, contributing to the TRM repertoire.

interpretationOur studies reveal human intestinal TRM repertoire establishment from the circulation, preferentially involving lymphoid tissue counterparts of recipient intestinal T cell clones, including TRMs. We have described the temporal and spatial dynamics of this active crosstalk between the circulating pool and the intestinal TRM pool.

fundingThis study was funded by the National Institute of Allergy and Infectious Diseases (NIAID) P01 grant AI106697.

Indexed as

Memory T CellsReceptors, Antigen, T-CellAllograftsCD8-Positive T-LymphocytesHumansIleumImmunologic MemoryReceptors, Antigen, T-CellDynamic reconstitutionHuman intestinal transplantation (ITx)T cell receptor (TCR) repertoireTCRβ sequencingTissue resident memory T cells (TRM)

Identifiers

PMID38422982
PMCPMC10944178
OpenAlexW4392229317

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.