Evidence map›Paper›PMID 38420512›Full record

ArticleFrontiers in immunology2023

Ehf and Fezf2 regulate late medullary thymic epithelial cell and thymic tuft cell development.

Sören Lammers, Victor Barrera, Philip Brennecke, Corey Miller, Joon Yoon, Jared Balolong, Mark S Anderson, Shannan Ho Sui, Lars M Steinmetz, Ulrich H von Andrian and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
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  7. Review
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  10. Review
  11. Review
  12. Article
  13. The Ins and Outs of Thymic Epithelial Cell Differentiation and Function.Advances in experimental medicine and biology · 2025
    Review
  14. Review
  15. Generation and repair of thymic epithelial cells.The Journal of experimental medicine · 2024
    Review
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Sören LammersInstitute for Theoretical Physics, Heidelberg University, Heidelberg, Germany.
Victor BarreraBioinformatics Core, Harvard T.H. Chan School of Public Health, Boston, MA, United States.
Philip BrenneckeDepartment of Genetics, Stanford University, School of Medicine, Stanford, CA, United States.
Corey MillerDiabetes Center, University of California, San Francisco (UCSF), San Francisco, CA, United States.
Joon YoonBioinformatics Core, Harvard T.H. Chan School of Public Health, Boston, MA, United States.
Jared BalolongDiabetes Center, University of California, San Francisco (UCSF), San Francisco, CA, United States.
Mark S AndersonDiabetes Center, University of California, San Francisco (UCSF), San Francisco, CA, United States.
Shannan Ho SuiBioinformatics Core, Harvard T.H. Chan School of Public Health, Boston, MA, United States.
Lars M SteinmetzDepartment of Genetics, Stanford University, School of Medicine, Stanford, CA, United States.
Ulrich H von AndrianDepartment of Immunology & HMS Center for Immune Imaging, Harvard Medical School, Boston, MA, United States.
Kristin RattayDepartment of Immunology & HMS Center for Immune Imaging, Harvard Medical School, Boston, MA, United States.
Harvard University · USUniversity of California, San Francisco · USStanford University · USHeidelberg University · DEPhilipps University of Marburg · DERagon Institute of MGH, MIT and Harvard · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
Quantitative Trait Dissection by Reciprocal HemizygosityR01GM068717 · NIGMS · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2003 to 2014
$6.5M
Thymic medullary epithelial cell turnover and control of immune toleranceR37AI097457 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mark S Anderson · 2017 to 2026
$4.0M
Intravascular Immune Surveillance by Anti-viral T CellsR01AI155865 · NIAID · HARVARD MEDICAL SCHOOL · PI VON ANDRIAN, ULRICH H · 2021 to 2025
$3.2M
NHGRI NIH HHS P01 HG000205NIAID NIH HHS R01 AI155865NIAID NIH HHS R37 AI097457NIGMS NIH HHS R01 GM068717
6 · The paper itself

Abstract

Thymic epithelial cells are indispensable for T cell maturation and selection and the induction of central immune tolerance. The self-peptide repertoire expressed by medullary thymic epithelial cells is in part regulated by the transcriptional regulator Aire (Autoimmune regulator) and the transcription factor Fezf2. Due to the high complexity of mTEC maturation stages (i.e., post-Aire, Krt10+ mTECs, and Dclk1+ Tuft mTECs) and the heterogeneity in their gene expression profiles (i.e., mosaic expression patterns), it has been challenging to identify the additional factors complementing the transcriptional regulation. We aimed to identify the transcriptional regulators involved in the regulation of mTEC development and self-peptide expression in an unbiased and genome-wide manner. We used ATAC footprinting analysis as an indirect approach to identify transcription factors involved in the gene expression regulation in mTECs, which we validated by ChIP sequencing. This study identifies Fezf2 as a regulator of the recently described thymic Tuft cells (i.e., Tuft mTECs). Furthermore, we identify that transcriptional regulators of the ELF, ESE, ERF, and PEA3 subfamily of the ETS transcription factor family and members of the Krüppel-like family of transcription factors play a role in the transcriptional regulation of genes involved in late mTEC development and promiscuous gene expression.

Indexed as

Transcription FactorsTuft CellsEpithelial CellsGene Expression RegulationPeptidesPeptidesTranscription Factorscentral toleranceEhfFezf2medullary thymic epithelial cellthymusTuft cells

Identifiers

PMID38420512
PMCPMC10901246
OpenAlexW4391823980

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.