Evidence map›Paper›PMID 38419709›Full record

ArticleFrontiers in neurology2024

Identification of hub genes significantly linked to tuberous sclerosis related-epilepsy and lipid metabolism via bioinformatics analysis.

Wang Weiliang, Ren Yinghao, Hou Weiliang, Zhang Xiaobin, Yang Chenglong, An Weimiao, Xu Fei, Wang Fengpeng

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neurology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Wang Weiliang *Epilepsy Center, Xiamen Humanity Hospital Fujian Medical University, Xiamen, Fujian, China.
Ren Yinghao *Department of Dermatology, Xiamen Humanity Hospital Fujian Medical University, Xiamen, Fujian, China.
Hou WeiliangDepartment of Neurosurgery, Huashan Hospital, Shanghai Medical College, State Key Laboratory of Medical Neurobiology, Ministry of Education Frontiers Center for Brain Science and Institutes of Brain Science, Fudan University, Shanghai, China.
Zhang XiaobinEpilepsy Center, Xiamen Humanity Hospital Fujian Medical University, Xiamen, Fujian, China.
Yang ChenglongDepartment of Neurosurgery, The Cancer Hospital of Harbin Medical University, Harbin, Heilongjiang, China.
An WeimiaoEpilepsy Center, Xiamen Humanity Hospital Fujian Medical University, Xiamen, Fujian, China.
Xu FeiDepartment of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Wang FengpengEpilepsy Center, Xiamen Humanity Hospital Fujian Medical University, Xiamen, Fujian, China.
Fujian Medical University · CNHarbin Medical University · CNFudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Tuberous sclerosis complex (TSC) is one of the most common genetic causes of epilepsy. Identifying differentially expressed lipid metabolism related genes (DELMRGs) is crucial for guiding treatment decisions. Methods: We acquired tuberous sclerosis related epilepsy (TSE) datasets, GSE16969 and GSE62019. Differential expression analysis identified 1,421 differentially expressed genes (DEGs). Intersecting these with lipid metabolism related genes (LMRGs) yielded 103 DELMRGs. DELMRGs underwent enrichment analyses, biomarker selection, disease classification modeling, immune infiltration analysis, weighted gene co-expression network analysis (WGCNA) and AUCell analysis. Results: In TSE datasets, 103 DELMRGs were identified. Four diagnostic biomarkers (ALOX12B, CBS, CPT1C, and DAGLB) showed high accuracy for epilepsy diagnosis, with an AUC value of 0.9592. Significant differences ( Conclusions: Our research unveiled potential DELMRGs (ALOX12B, CBS, CPT1C and DAGLB) in TSE, which may provide new ideas for studying the psathogenesis of epilepsy.

Indexed as

bioinformatics analysisbiomarkersepilepsylipid metabolismtuberou sclerosis complex

Identifiers

PMID38419709
PMCPMC10899687
OpenAlexW4391818259

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.