Evidence map›Paper›PMID 38419670›Full record

ArticleJAMIA open2024

Bridging information gaps in menopause status classification through natural language processing.

Hannah Eyre, Patrick R Alba, Carolyn J Gibson, Elise Gatsby, Kristine E Lynch, Olga V Patterson, Scott L DuVall

Open access · goldAbstract read
In one paragraph

Article in JAMIA open, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hannah EyreVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT 84113, United States.
Patrick R AlbaVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT 84113, United States.
Carolyn J GibsonSan Francisco VA Healthcare System, San Francisco, CA 94121, United States.
Elise GatsbyVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT 84113, United States.
Kristine E LynchVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT 84113, United States.
Olga V PattersonVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT 84113, United States.ORCID https://orcid.org/0000-0002-8717-5975
Scott L DuVallVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT 84113, United States.
University of Utah · USUniversity of California, San Francisco · USVA Salt Lake City Healthcare System · US

Funding

HSRD VA IK2 HX002402
6 · The paper itself

Abstract

Objective: To use natural language processing (NLP) of clinical notes to augment existing structured electronic health record (EHR) data for classification of a patient's menopausal status. Materials and methods: A rule-based NLP system was designed to capture evidence of a patient's menopause status including dates of a patient's last menstrual period, reproductive surgeries, and postmenopause diagnosis as well as their use of birth control and menstrual interruptions. NLP-derived output was used in combination with structured EHR data to classify a patient's menopausal status. NLP processing and patient classification were performed on a cohort of 307 512 female Veterans receiving healthcare at the US Department of Veterans Affairs (VA). Results: NLP was validated at 99.6% precision. Including the NLP-derived data into a menopause phenotype increased the number of patients with data relevant to their menopausal status by 118%. Using structured codes alone, 81 173 (27.0%) are able to be classified as postmenopausal or premenopausal. However, with the inclusion of NLP, this number increased 167 804 (54.6%) patients. The premenopausal category grew by 532.7% with the inclusion of NLP data. Discussion: By employing NLP, it became possible to identify documented data elements that predate VA care, originate outside VA networks, or have no corresponding structured field in the VA EHR that would be otherwise inaccessible for further analysis. Conclusion: NLP can be used to identify concepts relevant to a patient's menopausal status in clinical notes. Adding NLP-derived data to an algorithm classifying a patient's menopausal status significantly increases the number of patients classified using EHR data, ultimately enabling more detailed assessments of the impact of menopause on health outcomes.

Indexed as

menopausenatural language processingphenotypingwomen’s health

Identifiers

PMID38419670
PMCPMC10901606
OpenAlexW4391709909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.