Evidence map›Paper›PMID 38419048›Full record

ArticleMicrobial cell factories2024

Engineering styrene biosynthesis: designing a functional trans-cinnamic acid decarboxylase in Pseudomonas.

Ana García-Franco, Patricia Godoy, Estrella Duque, Juan L Ramos

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ana García-FrancoEstación Experimental del Zaidín. Consejo Superior de Investigaciones Científicas, c/ Profesor Albareda 1, 18008, Granada, Spain.
Patricia GodoyEstación Experimental del Zaidín. Consejo Superior de Investigaciones Científicas, c/ Profesor Albareda 1, 18008, Granada, Spain.
Estrella DuqueEstación Experimental del Zaidín. Consejo Superior de Investigaciones Científicas, c/ Profesor Albareda 1, 18008, Granada, Spain.
Juan L RamosEstación Experimental del Zaidín. Consejo Superior de Investigaciones Científicas, c/ Profesor Albareda 1, 18008, Granada, Spain. juanluis.ramos@eez.csic.es.ORCID http://orcid.org/0000-0002-8731-7435
Consejo Superior de Investigaciones Científicas · ES

Funding

Agencia Estatal de Investigación TED2021-129632BI00Ministerio de Ciencia e Innovación PDI-2018-094370BI00
6 · The paper itself

Abstract

We are interested in converting second generation feedstocks into styrene, a valuable chemical compound, using the solvent-tolerant Pseudomonas putida DOT-T1E as a chassis. Styrene biosynthesis takes place from L-phenylalanine in two steps: firstly, L-phenylalanine is converted into trans-cinnamic acid (tCA) by PAL enzymes and secondly, a decarboxylase yields styrene. This study focuses on designing and synthesizing a functional trans-cinnamic acid decarboxylase in Pseudomonas putida. To achieve this, we utilized the "wholesale" method, involving deriving two consensus sequences from multi-alignments of homologous yeast ferulate decarboxylase FDC1 sequences with > 60% and > 50% identity, respectively. These consensus sequences were used to design Pseudomonas codon-optimized genes named psc1 and psd1 and assays were conducted to test the activity in P. putida. Our results show that the PSC1 enzyme effectively decarboxylates tCA into styrene, whilst the PSD1 enzyme does not. The optimal conditions for the PSC1 enzyme, including pH and temperature were determined. The L-phenylalanine DOT-T1E derivative Pseudomonas putida CM12-5 that overproduces L-phenylalanine was used as the host for expression of pal/psc1 genes to efficiently convert L-phenylalanine into tCA, and the aromatic carboxylic acid into styrene. The highest styrene production was achieved when the pal and psc1 genes were co-expressed as an operon in P. putida CM12-5. This construction yielded styrene production exceeding 220 mg L

Indexed as

Carboxy-LyasesCinnamatesPseudomonas putidaPhenylalaninePseudomonasStyreneCarboxy-LyasesCinnamatescinnamic acidphenylacrylic acid decarboxylasePhenylalanineStyreneAromatic hydrocarbonsDecarboxylasesPAL enzymesPseudomonasStyreneSynthetic genes

Identifiers

PMID38419048
PMCPMC10903017
OpenAlexW4392240823

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.