Evidence map›Paper›PMID 38418815›Full record

ArticleNature communications2024

Dispersion patterns of SARS-CoV-2 variants Gamma, Lambda and Mu in Latin America and the Caribbean.

Tiago Gräf, Alexander A Martinez, Gonzalo Bello, Simon Dellicour, Philippe Lemey, Vittoria Colizza, Mattia Mazzoli, Chiara Poletto, Vanessa Leiko Oikawa Cardoso, Alexandre Freitas da Silva and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  8. Editorial: Global excellence in virology: Latin America.Frontiers in cellular and infection microbiology · 2025
    Article
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  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Tiago GräfLaboratório de Virologia Molecular, Instituto Carlos Chagas, Fundação Oswaldo Cruz, Curitiba, Brazil. tiago.graf@fiocruz.br.ORCID 0000-0003-4921-7975
Alexander A MartinezGorgas Memorial Institute for Health Studies, Panama City, Panama.ORCID 0000-0002-7816-3040
Gonzalo BelloLaboratório de Arbovírus e Vírus Hemorrágicos, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil.ORCID 0000-0002-2724-2793
Simon DellicourSpatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, CP160/12, 50 av. FD Roosevelt, Bruxelles, Belgium.ORCID 0000-0001-9558-1052
Philippe LemeyDepartment of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, University of Leuven, Leuven, Belgium.ORCID 0000-0003-2826-5353
Vittoria ColizzaSorbonne Université, INSERM, Institut Pierre Louis d'Épidémiologie et de Santé Publique (IPLESP), Paris, France.ORCID 0000-0002-2113-2374
Mattia MazzoliSorbonne Université, INSERM, Institut Pierre Louis d'Épidémiologie et de Santé Publique (IPLESP), Paris, France.
Chiara PolettoDepartment of Molecular Medicine, University of Padova, 35121, Padova, Italy.
Vanessa Leiko Oikawa CardosoLaboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, FIOCRUZ-Bahia, Salvador, Brazil.ORCID 0000-0002-3220-9680
Alexandre Freitas da SilvaNúcleo de Bioinformática, Instituto Aggeu Magalhães, Fundação Oswaldo Cruz, Pernambuco, Brazil.ORCID 0000-0002-8034-8562
COVIGEN
Fernando Couto MottaLaboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Paola Cristina ResendeLaboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.ORCID 0000-0002-2884-3662
Marilda M SiqueiraLaboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Leticia FrancoInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.
Lionel GreshInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.ORCID 0000-0002-2333-1748
Jean-Marc GabastouInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.
Angel RodriguezInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.
Andrea VicariInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.
Sylvain AldighieriInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.ORCID 0000-0002-3458-7888
Jairo Mendez-RicoInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA.
Juliana Almeida LeiteInfectious Hazards Management Unit, Health Emergencies Department, Pan American Health Organization, Washington D.C., USA. leitejul@paho.org.ORCID 0000-0002-8620-114X

Funding

Statistical Innovation to Integrate Sequences and Phenotypes for Scalable Phylodynamic InferenceR01AI153044 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Marc A. Suchard · 2021 to 2026
$2.4M
NIAID NIH HHS R01 AI153044Wellcome Trust
6 · The paper itself

Abstract

Latin America and Caribbean (LAC) regions were an important epicenter of the COVID-19 pandemic and SARS-CoV-2 evolution. Through the COVID-19 Genomic Surveillance Regional Network (COVIGEN), LAC countries produced an important number of genomic sequencing data that made possible an enhanced SARS-CoV-2 genomic surveillance capacity in the Americas, paving the way for characterization of emerging variants and helping to guide the public health response. In this study we analyzed approximately 300,000 SARS-CoV-2 sequences generated between February 2020 and March 2022 by multiple genomic surveillance efforts in LAC and reconstructed the diffusion patterns of the main variants of concern (VOCs) and of interest (VOIs) possibly originated in the Region. Our phylogenetic analysis revealed that the spread of variants Gamma, Lambda and Mu reflects human mobility patterns due to variations of international air passenger transportation and gradual lifting of social distance measures previously implemented in countries. Our results highlight the potential of genetic data to reconstruct viral spread and unveil preferential routes of viral migrations that are shaped by human mobility patterns.

Indexed as

COVID-19SARS-CoV-2Caribbean RegionHumansLatin AmericaPandemicsPhylogeny

Identifiers

PMID38418815
PMCPMC10902334

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.