Evidence map›Paper›PMID 38415644›Full record

ArticleThe journal of physical chemistry. B2024

Quantifying Fluorescence Lifetime Responsiveness of Environment-Sensitive Probes for Membrane Fluidity Measurements.

Franziska Ragaller, Ellen Sjule, Yagmur Balim Urem, Jan Schlegel, Rojbin El, Dunja Urbancic, Iztok Urbancic, Hans Blom, Erdinc Sezgin

Open access · hybridAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  9. Exploring bacteria-surface interactions with a fluorescent membrane tension probe.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  11. Sterols in plant biologyCell surface (Amsterdam, Netherlands) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Franziska RagallerDepartment of Women's and Children's Health, Science for Life Laboratory, Karolinska Institutet, 17165 Solna, Sweden.ORCID 0000-0002-4148-262X
Ellen SjuleDepartment of Women's and Children's Health, Science for Life Laboratory, Karolinska Institutet, 17165 Solna, Sweden.ORCID 0000-0003-0166-2826
Yagmur Balim UremDepartment of Women's and Children's Health, Science for Life Laboratory, Karolinska Institutet, 17165 Solna, Sweden.
Jan SchlegelDepartment of Women's and Children's Health, Science for Life Laboratory, Karolinska Institutet, 17165 Solna, Sweden.ORCID 0000-0003-3159-8079
Rojbin ElWeatherall Institute of Molecular Medicine, University of Oxford, OX39DS Oxford, United Kingdom.
Dunja UrbancicWeatherall Institute of Molecular Medicine, University of Oxford, OX39DS Oxford, United Kingdom.
Iztok UrbancicLaboratory of Biophysics, Condensed Matter Physics Department, Jožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0003-3603-6585
Hans BlomScience for Life Laboratory, Department of Applied Physics, Royal Institute of Technology, 17165 Solna, Sweden.
Erdinc SezginDepartment of Women's and Children's Health, Science for Life Laboratory, Karolinska Institutet, 17165 Solna, Sweden.ORCID 0000-0002-4915-388X
Science for Life Laboratory · SEJožef Stefan Institute · SIUniversity of Ljubljana · SIUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structural diversity of different lipid species within the membrane defines its biophysical properties such as membrane fluidity, phase transition, curvature, charge distribution, and tension. Environment-sensitive probes, which change their spectral properties in response to their surrounding milieu, have greatly contributed to our understanding of such biophysical properties. To realize the full potential of these probes and avoid misinterpretation of their spectral responses, a detailed investigation of their fluorescence characteristics in different environments is necessary. Here, we examined the fluorescence lifetime of two newly developed membrane order probes, NR12S and NR12A, in response to alterations in their environments such as the degree of lipid saturation, cholesterol content, double bond position and configuration, and phospholipid headgroup. As a comparison, we investigated the lifetime sensitivity of the membrane tension probe Flipper in these environments. Applying fluorescence lifetime imaging microscopy (FLIM) in both model membranes and biological membranes, all probes distinguished membrane phases by lifetime but exhibited different lifetime sensitivities to varying membrane biophysical properties (e.g., cholesterol). While the lifetime of Flipper is particularly sensitive to the membrane cholesterol content, the NR12S and NR12A lifetimes are moderately sensitive to both the cholesterol content and lipid acyl chains. Moreover, all of the probes exhibit longer lifetimes at longer emission wavelengths in membranes of any complexity. This emission wavelength dependency results in varying lifetime resolutions at different spectral regions, which are highly relevant for FLIM data acquisition. Our data provide valuable insights on how to perform FLIM with these probes and highlight both their potential and limitations.

Indexed as

Fluorescent DyesMembrane FluidityCell MembraneCholesterolPhospholipidsSpectrometry, FluorescenceCholesterolFluorescent DyesPhospholipids

Identifiers

PMID38415644
PMCPMC10926104
OpenAlexW4392239986

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.