Evidence map›Paper›PMID 38413820›Full record

ArticleExperimental & molecular medicine2024

Cost and time-efficient construction of a 3'-end mRNA library from unpurified bulk RNA in a single tube.

Jungwon Choi, Jungheun Hyun, Jieun Hyun, Jae-Hee Kim, Ji Hyun Lee, Duhee Bang

Abstract read
In one paragraph

Article in Experimental & molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Integration of Bulk and Single-Cell RNA Sequencing Analyses in Biomedicine.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jungwon Choi *Department of Chemistry, Yonsei University, Seoul, Republic of Korea.
Jungheun Hyun *Department of Chemistry, Yonsei University, Seoul, Republic of Korea.
Jieun Hyun *Department of Chemistry, Yonsei University, Seoul, Republic of Korea.
Jae-Hee KimDepartment of Chemistry, Yonsei University, Seoul, Republic of Korea.ORCID 0000-0001-6605-4384
Ji Hyun LeeDepartment of Clinical Pharmacology and Therapeutics, College of Medicine, Kyung Hee University, Seoul, Republic of Korea. hyunihyuni@khu.ac.kr.ORCID 0000-0003-3640-2928
Duhee BangDepartment of Chemistry, Yonsei University, Seoul, Republic of Korea. duheebang@yonsei.ac.kr.ORCID 0000-0001-8775-9877

Funding

National Research Foundation of Korea (NRF) RS-2023-00228147
6 · The paper itself

Abstract

The major drawbacks of RNA sequencing (RNA-seq), a remarkably accurate transcriptome profiling method, is its high cost and poor scalability. Here, we report a highly scalable and cost-effective method for transcriptomics profiling called Bulk transcriptOme profiling of cell Lysate in a single poT (BOLT-seq), which is performed using unpurified bulk 3'-end mRNA in crude cell lysates. During BOLT-seq, RNA/DNA hybrids are directly subjected to tagmentation, and second-strand cDNA synthesis and RNA purification are omitted, allowing libraries to be constructed in 2 h of hands-on time. BOLT-seq was successfully used to cluster small molecule drugs based on their mechanisms of action and intended targets. BOLT-seq competes effectively with alternative library construction and transcriptome profiling methods.

Indexed as

Gene Expression ProfilingRNADNA, ComplementaryGene LibraryRNA, MessengerDNA, ComplementaryRNARNA, Messenger

Identifiers

PMID38413820
PMCPMC10907608

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.