Evidence map›Paper›PMID 38413599›Full record

ArticleNature communications2024

The emergence of circadian timekeeping in the intestine.

Kathyani Parasram, Amy Zuccato, Minjeong Shin, Reegan Willms, Brian DeVeale, Edan Foley, Phillip Karpowicz

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Intrinsic regulation of intestinal stem cell fate and homeostasis by Tet.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kathyani ParasramDepartment of Biomedical Sciences, University of Windsor, Windsor, ON, N9B 3P4, Canada.ORCID 0000-0002-3601-5218
Amy ZuccatoDepartment of Biomedical Sciences, University of Windsor, Windsor, ON, N9B 3P4, Canada.
Minjeong ShinDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
Reegan WillmsDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
Brian DeVealeDepartment of Biomedical Sciences, University of Windsor, Windsor, ON, N9B 3P4, Canada.
Edan FoleyDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
Phillip KarpowiczDepartment of Biomedical Sciences, University of Windsor, Windsor, ON, N9B 3P4, Canada. phillip.karpowicz@uwindsor.ca.ORCID 0000-0002-3116-4804
University of Windsor · CAUniversity of Alberta · CA

Funding

Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada (NSERC Canadian Network for Research and Innovation in Machining Technology) RGPIN-2020-04252Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) MOP77746Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (Conseil de Recherches en Sciences Naturelles et en Génie du Canada) RGPIN-2023-04028
6 · The paper itself

Abstract

The circadian clock is a molecular timekeeper, present from cyanobacteria to mammals, that coordinates internal physiology with the external environment. The clock has a 24-h period however development proceeds with its own timing, raising the question of how these interact. Using the intestine of Drosophila melanogaster as a model for organ development, we track how and when the circadian clock emerges in specific cell types. We find that the circadian clock begins abruptly in the adult intestine and gradually synchronizes to the environment after intestinal development is complete. This delayed start occurs because individual cells at earlier stages lack the complete circadian clock gene network. As the intestine develops, the circadian clock is first consolidated in intestinal stem cells with changes in Ecdysone and Hnf4 signalling influencing the transcriptional activity of Clk/cyc to drive the expression of tim, Pdp1, and vri. In the mature intestine, stem cell lineage commitment transiently disrupts clock activity in differentiating progeny, mirroring early developmental clock-less transitions. Our data show that clock function and differentiation are incompatible and provide a paradigm for studying circadian clocks in development and stem cell lineages.

Indexed as

Circadian ClocksDrosophila ProteinsAnimalsCircadian RhythmCLOCK ProteinsDrosophila melanogasterIntestinesMammalsCLOCK ProteinsDrosophila Proteins

Identifiers

PMID38413599
PMCPMC10899604
OpenAlexW4392190719

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.