Evidence map›Paper›PMID 38413586›Full record

ArticleNature communications2024

Comparative transcriptomics coupled to developmental grading via transgenic zebrafish reporter strains identifies conserved features in neutrophil maturation.

Stefanie Kirchberger, Mohamed R Shoeb, Daria Lazic, Andrea Wenninger-Weinzierl, Kristin Fischer, Lisa E Shaw, Filomena Nogueira, Fikret Rifatbegovic, Eva Bozsaky, Ruth Ladenstein and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. HIF1AJournal for immunotherapy of cancer · 2026
    Article
  2. Article
  3. Selenium and Selenoproteins in Neutrophil Functions.Biological trace element research · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

Stefanie Kirchberger *St. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria. stefanie.kirchberger@ccri.at.ORCID 0000-0001-6732-3355
Mohamed R Shoeb *St. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0002-8660-6825
Daria LazicSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Andrea Wenninger-WeinzierlSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Kristin FischerSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0002-8272-6037
Lisa E ShawMedical University of Vienna, Department of Dermatology, Vienna, Austria.ORCID 0000-0003-2273-7655
Filomena NogueiraSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0002-9854-9143
Fikret RifatbegovicSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0002-9956-2382
Eva BozsakySt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0001-6208-368X
Ruth LadensteinSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0001-6548-3873
Bernd BodenmillerDepartment of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-6325-7861
Thomas LionSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
David TraverCell and Developmental Biology, University of California, San Diego, CA, USA.ORCID 0000-0002-9652-7653
Matthias FarlikMedical University of Vienna, Department of Dermatology, Vienna, Austria.ORCID 0000-0003-0698-2992
Christian SchöferMedical University of Vienna, Division of Cell and Developmental Biology, Center for Anatomy and Cell Biology, Vienna, Austria.ORCID 0000-0001-9570-5692
Sabine Taschner-MandlSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0002-1439-5301
Florian HalbritterSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria. florian.halbritter@ccri.at.ORCID 0000-0003-2452-4784
Martin DistelSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria. martin.distel@ccri.at.ORCID 0000-0001-5942-0817
St Anna Children's Hospital · ATMedical University of Vienna · ATMax Perutz Labs · ATUniversity of California San Diego · USUniversity of Zurich · CH

Funding

Austrian Science Fund FWF I 4162Austrian Science Fund FWF TAI 454Austrian Science Fund FWF TAI 732
6 · The paper itself

Abstract

Neutrophils are evolutionarily conserved innate immune cells playing pivotal roles in host defense. Zebrafish models have contributed substantially to our understanding of neutrophil functions but similarities to human neutrophil maturation have not been systematically characterized, which limits their applicability to studying human disease. Here we show, by generating and analysing transgenic zebrafish strains representing distinct neutrophil differentiation stages, a high-resolution transcriptional profile of neutrophil maturation. We link gene expression at each stage to characteristic transcription factors, including C/ebp-β, which is important for late neutrophil maturation. Cross-species comparison of zebrafish, mouse, and human samples confirms high molecular similarity of immature stages and discriminates zebrafish-specific from pan-species gene signatures. Applying the pan-species neutrophil maturation signature to RNA-sequencing data from human neuroblastoma patients reveals association between metastatic tumor cell infiltration in the bone marrow and an overall increase in mature neutrophils. Our detailed neutrophil maturation atlas thus provides a valuable resource for studying neutrophil function at different stages across species in health and disease.

Indexed as

NeutrophilsZebrafishAnimalsAnimals, Genetically ModifiedBone MarrowGene Expression ProfilingHumansMice

Identifiers

PMID38413586
PMCPMC10899643
OpenAlexW4392200139

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.