Evidence map›Paper›PMID 38412132›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Saccharomycotina yeasts defy long-standing macroecological patterns.

Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail L LaBella, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matt Pennell, Chris Todd Hittinger and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Dominance of non-Microbiology (Reading, England) · 2025
    Article
  4. Article
  5. Article
  6. Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Kyle T DavidDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0001-9907-789X
Marie-Claire HarrisonDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0002-3013-9906
Dana A OpulenteLaboratory of Genetics, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.ORCID 0000-0003-3224-7510
Abigail L LaBellaDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0003-0068-6703
John F WoltersLaboratory of Genetics, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.ORCID 0000-0002-5477-4250
Xiaofan ZhouGuangdong Laboratory for Lingnan Modern Agriculture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Center, South China Agricultural University, Guangzhou 510642, China.ORCID 0000-0002-2879-6317
Xing-Xing ShenKey Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.ORCID 0000-0001-5765-1419
Marizeth GroenewaldWesterdijk Fungal Biodiversity Institute, Utrecht 3584, The Netherlands.ORCID 0000-0003-0835-5925
Matt PennellDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089.ORCID 0000-0002-2886-3970
Chris Todd HittingerLaboratory of Genetics, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.ORCID 0000-0001-5088-7461
Antonis RokasDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0002-7248-6551

Funding

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR01AI153356 · NIAID · VANDERBILT UNIVERSITY · PI Antonis Rokas · 2022 to 2026
$3.5M
Leveraging phylogenetic approaches to investigate the evolution of geneexpressionR35GM151348 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Matthew Wesley Pennell · 2023 to 2026
$1.6M
NIAID NIH HHS R01 AI153356NIGMS NIH HHS R35 GM151348
6 · The paper itself

Abstract

The Saccharomycotina yeasts ("yeasts" hereafter) are a fungal clade of scientific, economic, and medical significance. Yeasts are highly ecologically diverse, found across a broad range of environments in every biome and continent on earth; however, little is known about what rules govern the macroecology of yeast species and their range limits in the wild. Here, we trained machine learning models on 12,816 terrestrial occurrence records and 96 environmental variables to infer global distribution maps at ~1 km

Indexed as

BiodiversityEcosystemCarbonClimateForestsYeastsCarbonAIbiogeographyfungilatitudinal species gradientmacroecology

Identifiers

PMID38412132
PMCPMC10927492

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.