Evidence map›Paper›PMID 38411527›Full record

ArticleeLife2024

The structural repertoire of

Daniel S Yu, Megan A Outram, Ashley Smith, Carl L McCombe, Pravin B Khambalkar, Sharmin A Rima, Xizhe Sun, Lisong Ma, Daniel J Ericsson, David A Jones and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Solanaceous vegetables andHorticulture research · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. In Silico Identification of Pathogenicity Effectors onBiotech (Basel (Switzerland)) · 2025
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Daniel S YuResearch School of Biology, The Australian National University, Canberra, Australia.ORCID https://orcid.org/0000-0003-0454-7989
Megan A OutramResearch School of Biology, The Australian National University, Canberra, Australia.ORCID https://orcid.org/0000-0003-4510-3575
Ashley SmithResearch School of Biology, The Australian National University, Canberra, Australia.
Carl L McCombeResearch School of Biology, The Australian National University, Canberra, Australia.ORCID https://orcid.org/0000-0001-9347-8879
Pravin B KhambalkarResearch School of Biology, The Australian National University, Canberra, Australia.
Sharmin A RimaResearch School of Biology, The Australian National University, Canberra, Australia.
Xizhe SunResearch School of Biology, The Australian National University, Canberra, Australia.
Lisong MaResearch School of Biology, The Australian National University, Canberra, Australia.ORCID https://orcid.org/0000-0001-9288-869X
Daniel J EricssonResearch School of Biology, The Australian National University, Canberra, Australia.ORCID https://orcid.org/0000-0001-5101-9244
David A JonesResearch School of Biology, The Australian National University, Canberra, Australia.
Simon J WilliamsResearch School of Biology, The Australian National University, Canberra, Australia.ORCID https://orcid.org/0000-0003-4781-6261
Australian National University · AUHebei Agricultural University · CN

Funding

Australian Academy of Science Thomas Davies GrantAustralian Institute of Nuclear Science and Engineering Postgraduate Research AwardAustralian National University Future schemeAustralian Research Council DE170101165Australian Research Council DP200100388Australian Research Council FT200100135ICAR - National Agricultural Science Fund PhD International Fellowship
6 · The paper itself

Abstract

Plant pathogens secrete proteins, known as effectors, that function in the apoplast or inside plant cells to promote virulence. Effector recognition by cell-surface or cytosolic receptors results in the activation of defence pathways and plant immunity. Despite their importance, our general understanding of fungal effector function and recognition by immunity receptors remains poor. One complication often associated with effectors is their high sequence diversity and lack of identifiable sequence motifs precluding prediction of structure or function. In recent years, several studies have demonstrated that fungal effectors can be grouped into structural classes, despite significant sequence variation and existence across taxonomic groups. Using protein X-ray crystallography, we identify a new structural class of effectors hidden within the secreted in xylem (SIX) effectors from

Indexed as

Disease ResistanceFusariumSolanum lycopersicumBiological TransportCell MembraneCrystallography, X-RayFOLDfungal effectorsFusarium oxysporumplant biologysecreted in xylem effectorsSIX effectorsstructural biologytomato

Identifiers

PMID38411527
PMCPMC10942635
OpenAlexW4384693301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.