Evidence map›Paper›PMID 38411401›Full record

ArticleAngewandte Chemie (International ed. in English)2024

Direct Activation of Nucleobases with Small Molecules for the Conditional Control of Antisense Function.

Anirban Bardhan, Wes Brown, Savannah Albright, Michael Tsang, Lance A Davidson, Alexander Deiters

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anirban BardhanDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.
Wes BrownDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.
Savannah AlbrightDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.
Michael TsangDepartment of Cell Biology, Center for Integrative Organ Systems., University of Pittsburgh, Pittsburgh, PA 15260, United States.ORCID 0000-0001-7123-0063
Lance A DavidsonDepartment of Bioengineering, Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15260, United States.ORCID 0000-0002-2956-0437
Alexander DeitersDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.ORCID 0000-0003-0234-9209
University of Pittsburgh · US

Funding

The Biomechanics of morphogenesis in the frogR01HD044750 · NICHD · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVIDSON, LANCE A. · 2005 to 2020
$3.8M
A RESOURCE FOR DEVELOPMENTAL REGULATORY GENOMICSR24OD023046 · OD · CARNEGIE-MELLON UNIVERSITY · PI ETTENSOHN, CHARLES A., HINMAN, VERONICA FRANCES · 2017 to 2020
$2.2M
Biomechanics of MorphogenesisR37HD044750 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LANCE A. DAVIDSON · 2022 to 2026
$2.1M
Chemically Triggered Morpholino Antisense OligonucleotidesR01GM112728 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEITERS, ALEXANDER · 2015 to 2018
$1.2M
NICHD NIH HHS R01 HD044750NICHD NIH HHS R37 HD044750NIGMS NIH HHS R01 GM112728NIH HHS R01GM112728, R24OD023046NIH HHS R24 OD023046
6 · The paper itself

Abstract

Conditionally controlled antisense oligonucleotides provide precise interrogation of gene function at different developmental stages in animal models. Only one example of small molecule-induced activation of antisense function exist. This has been restricted to cyclic caged morpholinos that, based on sequence, can have significant background activity in the absence of the trigger. Here, we provide a new approach using azido-caged nucleobases that are site-specifically introduced into antisense morpholinos. The caging group design is a simple azidomethylene (Azm) group that, despite its very small size, efficiently blocks Watson-Crick base pairing in a programmable fashion. Furthermore, it undergoes facile decaging via Staudinger reduction when exposed to a small molecule phosphine, generating the native antisense oligonucleotide under conditions compatible with biological environments. We demonstrated small molecule-induced gene knockdown in mammalian cells, zebrafish embryos, and frog embryos. We validated the general applicability of this approach by targeting three different genes.

Indexed as

OligonucleotidesZebrafishAnimalsMammalsMorpholinosOligonucleotides, AntisensePhenotypeMorpholinosOligonucleotidesOligonucleotides, Antisenseantisenseconditional gene knockdownmorpholinoXenopuszebrafish

Identifiers

PMID38411401
PMCPMC12262082
OpenAlexW4392199820

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.