Evidence map›Paper›PMID 38411163›Full record

ArticleRNA biology2024

Urea supplementation improves mRNA in vitro transcription by decreasing both shorter and longer RNA byproducts.

Combes Francis, Pettersson Frida J, Bui Thanh-Huong, Molska Alicja, Komissarov Artem, Parot Jérémie, Borgos Sven Even

Open access · goldAbstract read
In one paragraph

Article in RNA biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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  6. Understanding the impact ofFrontiers in molecular biosciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Combes FrancisDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.ORCID 0000-0001-5926-4957
Pettersson Frida JDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.
Bui Thanh-HuongDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.
Molska AlicjaDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.
Komissarov ArtemDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.
Parot JérémieDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.
Borgos Sven EvenDepartment of Biotechnology and Nanomedicine, SINTEF, Trondheim, Norway.
SINTEF · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current letter to the editor describes the presence of RNA byproducts in small-scale in vitro transcription (IVT) reactions as evaluated by capillary gel electrophoresis, asymmetric flow field flow fractionation, immunoblotting, cell-free translation assays, and in IFN reporter cells. We compare standard T7 RNA polymerase (RNAP) based IVT reactions to two recently described protocols employing either urea supplementation or using the VSW3 RNAP. Our results indicate that urea supplementation yields considerably less RNA byproducts and positively affects the overall number of full-length transcripts. In contrast, VSW3 IVT reactions demonstrated a low yield and generated a higher fraction of truncated transcripts. Lastly, both urea mRNA and VSW3 mRNA elicited considerably less IFN responses after transfection in mouse macrophages.

Indexed as

RNATranscription, GeneticAnimalsDietary SupplementsDNA-Directed RNA PolymerasesMiceRNA, MessengerTransfectionDNA-Directed RNA PolymerasesRNARNA, MessengerIn vitro transcriptionmRNA byproductsRNA polymerasetranscript impuritiesureaVSW3

Identifiers

PMID38411163
PMCPMC10900265
OpenAlexW4392192315

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.