Evidence map›Paper›PMID 38410444›Full record

ArticlebioRxiv : the preprint server for biology2024

Resistance to Naïve and Formative Pluripotency Conversion in RSeT Human Embryonic Stem Cells.

Kevin G Chen, Kory R Johnson, Kyeyoon Park, Dragan Maric, Forest Yang, Wen Fang Liu, Yang C Fann, Barbara S Mallon, Pamela G Robey

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Kevin G ChenNIH Stem Cell Unit, Bethesda, Maryland 20892, USA.ORCID 0000-0003-2983-6330
Kory R JohnsonIntramural IT and Bioinformatics Program, Bethesda, Maryland 20892, USA.
Kyeyoon ParkNIH Stem Cell Unit, Bethesda, Maryland 20892, USA.
Dragan MaricFlow and Imaging Cytometry Core Facility, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland 20892, USA.
Forest YangNIH Stem Cell Unit, Bethesda, Maryland 20892, USA.
Wen Fang LiuNIH Stem Cell Unit, Bethesda, Maryland 20892, USA.
Yang C FannIntramural IT and Bioinformatics Program, Bethesda, Maryland 20892, USA.
Barbara S MallonNIH Stem Cell Unit, Bethesda, Maryland 20892, USA.
Pamela G RobeySkeletal Biology Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland 20892, USA.ORCID 0000-0002-5316-5576

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the most important properties of human embryonic stem cells (hESCs) is related to their primed and naïve pluripotent states. Our previous meta-analysis indicates the existence of heterogeneous pluripotent states derived from diverse naïve protocols. In this study, we have characterized a commercial medium (RSeT)-based pluripotent state under various growth conditions. Notably, RSeT hESCs can circumvent hypoxic growth conditions as required by naïve hESCs, in which some RSeT cells (e.g., H1 cells) exhibit much lower single cell plating efficiency, having altered or much retarded cell growth under both normoxia and hypoxia. Evidently, hPSCs lack many transcriptomic hallmarks of naïve and formative pluripotency (a phase between naive and primed states). Integrative transcriptome analysis suggests our primed and RSeT hESCs are close to the early stage of post-implantation embryos, similar to the previously reported primary hESCs and early hESC cultures. Moreover, RSeT hESCs did not express naïve surface markers such as CD75, SUSD2, and CD130 at a significant level. Biochemically, RSeT hESCs exhibit a differential dependency of FGF2 and co-independency of both Janus kinase (JAK) and TGFβ signaling in a cell-line-specific manner. Thus, RSeT hESCs represent a previously unrecognized pluripotent state downstream of formative pluripotency. Our data suggest that human naïve pluripotent potentials may be restricted in RSeT medium. Hence, this study provides new insights into pluripotent state transitions

Indexed as

cell proliferationhuman embryonic stem cellsnaïve pluripotencyRSeT mediumtranscriptome

Identifiers

PMID38410444
PMCPMC10896352

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.