Evidence map›Paper›PMID 38409292›Full record

ArticleNature plants2024

A diffusible small-RNA-based Turing system dynamically coordinates organ polarity.

Emanuele Scacchi, Gael Paszkiewicz, Khoa Thi Nguyen, Shreyas Meda, Agata Burian, Walter de Back, Marja C P Timmermans

Abstract read
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In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Male Germ Cell Specification in Plants.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Emanuele Scacchi *Center for Plant Molecular Biology, University of Tübingen, Tübingen, Germany. emanuele.scacchi@zmbp.uni-tuebingen.de.ORCID http://orcid.org/0000-0002-7286-3273
Gael Paszkiewicz *Center for Plant Molecular Biology, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0001-5060-9162
Khoa Thi Nguyen *Center for Plant Molecular Biology, University of Tübingen, Tübingen, Germany.
Shreyas MedaCenter for Plant Molecular Biology, University of Tübingen, Tübingen, Germany.
Agata BurianInstitute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.ORCID http://orcid.org/0000-0002-8912-483X
Walter de BackInstitute for Medical Informatics and Biometry, Faculty of Medicine Carl Gustav Carus, TU Dresden, Dresden, Germany.
Marja C P TimmermansCenter for Plant Molecular Biology, University of Tübingen, Tübingen, Germany. marja.timmermans@zmbp.uni-tuebingen.de.ORCID http://orcid.org/0000-0003-1931-9209
University of Tübingen · DETrường ĐH Nguyễn Tất Thành · VNUniversity of Silesia in Katowice · PLZimmer Biomet (Germany) · DE

Funding

Alexander von Humboldt-Stiftung (Alexander von Humboldt Foundation) Professorship to MTNarodowe Centrum Nauki (National Science Centre) SONATA BIS 6 (2016/22/E/NZ3/00342)
6 · The paper itself

Abstract

The formation of a flat and thin leaf presents a developmentally challenging problem, requiring intricate regulation of adaxial-abaxial (top-bottom) polarity. The patterning principles controlling the spatial arrangement of these domains during organ growth have remained unclear. Here we show that this regulation in Arabidopsis thaliana is achieved by an organ-autonomous Turing reaction-diffusion system centred on mobile small RNAs. The data illustrate how Turing dynamics transiently instructed by prepatterned information is sufficient to self-sustain properly oriented polarity in a dynamic, growing organ, presenting intriguing parallels to left-right patterning in the vertebrate embryo. Computational modelling demonstrates that this self-organizing system continuously adapts to coordinate the robust planar polarity of a flat leaf while affording flexibility to generate the tissue patterns of evolutionarily diverse organ shapes. Our findings identify a small-RNA-based Turing network as a dynamic regulator of organ polarity that accounts for leaf shape diversity at the level of the individual organ, plant or species.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantPlant LeavesRNAArabidopsis ProteinsRNA

Identifiers

PMID38409292
OpenAlexW4392166089

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.