Evidence map›Paper›PMID 38409278›Full record

ArticleScientific data2024

The Dresden in vivo OCT dataset for automatic middle ear segmentation.

Peng Liu, Svea Steuer, Jonas Golde, Joseph Morgenstern, Yujia Hu, Catherina Schieffer, Steffen Ossmann, Lars Kirsten, Sebastian Bodenstedt, Micha Pfeiffer and 3 more

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Peng LiuDepartment of Otorhinolaryngology Head and Neck Surgery, University Hospital Carl Gustav Carus, TUD Dresden University of Technology, Faculty of Medicine, 01307, Dresden, Germany. peng.liu@nct-dresden.de.ORCID 0009-0002-4280-3672
Svea SteuerElse Kröner Fresenius Center, TUD Dresden University of Technology, 01307, Dresden, Germany.ORCID 0009-0002-1419-8698
Jonas GoldeElse Kröner Fresenius Center, TUD Dresden University of Technology, 01307, Dresden, Germany.
Joseph MorgensternDepartment of Otorhinolaryngology Head and Neck Surgery, University Hospital Carl Gustav Carus, TUD Dresden University of Technology, Faculty of Medicine, 01307, Dresden, Germany.ORCID 0000-0001-6301-9575
Yujia HuDepartment of Translational Surgical Oncology, National Center for Tumor Diseases (NCT/UCC Dresden), German Cancer Research Center (DKFZ), Helmholtz-Zentrum Dresden-Rossendorf (HZDR), 01307, Dresden, Germany.
Catherina SchiefferEar Research Center Dresden, TUD Dresden University of Technology, 01307, Dresden, Germany.
Steffen OssmannEar Research Center Dresden, TUD Dresden University of Technology, 01307, Dresden, Germany.
Lars KirstenClinical Sensoring and Monitoring, TUD Dresden University of Technology, 01307, Dresden, Germany.ORCID 0009-0008-7642-8608
Sebastian BodenstedtDepartment of Translational Surgical Oncology, National Center for Tumor Diseases (NCT/UCC Dresden), German Cancer Research Center (DKFZ), Helmholtz-Zentrum Dresden-Rossendorf (HZDR), 01307, Dresden, Germany.ORCID 0000-0002-2203-9729
Micha PfeifferDepartment of Translational Surgical Oncology, National Center for Tumor Diseases (NCT/UCC Dresden), German Cancer Research Center (DKFZ), Helmholtz-Zentrum Dresden-Rossendorf (HZDR), 01307, Dresden, Germany.
Stefanie SpeidelDepartment of Translational Surgical Oncology, National Center for Tumor Diseases (NCT/UCC Dresden), German Cancer Research Center (DKFZ), Helmholtz-Zentrum Dresden-Rossendorf (HZDR), 01307, Dresden, Germany.ORCID 0000-0002-4590-1908
Edmund KochElse Kröner Fresenius Center, TUD Dresden University of Technology, 01307, Dresden, Germany.
Marcus NeudertDepartment of Otorhinolaryngology Head and Neck Surgery, University Hospital Carl Gustav Carus, TUD Dresden University of Technology, Faculty of Medicine, 01307, Dresden, Germany. marcus.neudert@tu-dresden.de.
Fresenius (Germany) · DEGerman Cancer Research Center · DETechnische Universität Dresden · DEHelmholtz-Zentrum Dresden-Rossendorf · DE

Funding

TRD3: Percutaneous and Interstitial ImagingP41EB015903 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI Jacqueline Namati · 2012 to 2026
$22.4M
NIBIB NIH HHS P41 EB015903
6 · The paper itself

Abstract

Endoscopic optical coherence tomography (OCT) offers a non-invasive approach to perform the morphological and functional assessment of the middle ear in vivo. However, interpreting such OCT images is challenging and time-consuming due to the shadowing of preceding structures. Deep neural networks have emerged as a promising tool to enhance this process in multiple aspects, including segmentation, classification, and registration. Nevertheless, the scarcity of annotated datasets of OCT middle ear images poses a significant hurdle to the performance of neural networks. We introduce the Dresden in vivo OCT Dataset of the Middle Ear (DIOME) featuring 43 OCT volumes from both healthy and pathological middle ears of 29 subjects. DIOME provides semantic segmentations of five crucial anatomical structures (tympanic membrane, malleus, incus, stapes and promontory), and sparse landmarks delineating the salient features of the structures. The availability of these data facilitates the training and evaluation of algorithms regarding various analysis tasks with middle ear OCT images, e.g. diagnostics.

Indexed as

Ear, MiddleTomography, Optical CoherenceAlgorithmsHumansNeural Networks, Computer

Identifiers

PMID38409278
PMCPMC10967373
OpenAlexW4392162972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.