Evidence map›Paper›PMID 38409226›Full record

ArticleNature communications2024

Quiescence enables unrestricted cell fate in naive embryonic stem cells.

Le Tran Phuc Khoa, Wentao Yang, Mengrou Shan, Li Zhang, Fengbiao Mao, Bo Zhou, Qiang Li, Rebecca Malcore, Clair Harris, Lili Zhao and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Le Tran Phuc KhoaDepartment of Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90033, USA.ORCID 0000-0002-6076-3857
Wentao YangDepartment of Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90033, USA.
Mengrou ShanDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Li ZhangDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Fengbiao MaoInstitute of Medical Innovation and Research, Peking University Third Hospital, Beijing, China.
Bo ZhouDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Qiang LiDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI, 48105, USA.
Rebecca MalcoreDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID 0000-0001-7899-8294
Clair HarrisDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Lili ZhaoBeaumont Hospital, Wayne, 33155 Annapolis St., Wayne, MI, 48184, USA.
Rajesh C RaoDepartment of Ophthalmology & Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, 1000 Wall St., Ann Arbor, MI, 48105, USA.ORCID 0000-0002-5776-8366
Shigeki IwaseDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID 0000-0003-2280-7422
Sundeep KalantryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID 0000-0003-0763-8050
Stephanie L BielasDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID 0000-0003-0567-5632
Costas A LyssiotisDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Yali DouDepartment of Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90033, USA. yalidou@usc.edu.ORCID 0000-0002-4040-1429
University of Michigan · USUniversity of Southern California · USBeaumont Hospital, Royal Oak · USPeking University · CN

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MYLES G COCKBURN · 1985 to 2026
$181.4M
XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 1988 to 2026
$178.2M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Function of MLL in transcription regulationR01GM082856 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DOU, YALI · 2009 to 2023
$4.0M
Investigating Novel Modes of Epigenetic Regulation Through the Polycomb GroupR01HD095463 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2018 to 2022
$2.4M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
PRDM16 Function in Neural DevelopmentR01NS100156 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DOU, YALI · 2016 to 2020
$2.1M
Stromal metabolism promotes therapeutic resistance in pancreatic cancerR01CA248160 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LYSSIOTIS, COSTAS ANDREAS · 2020 to 2024
$2.0M
Targeting metabolic stress to induce pancreatic tumor cell deathR01CA244931 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LYSSIOTIS, COSTAS ANDREAS · 2020 to 2024
$1.9M
NCI NIH HHS P30 CA014089NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA244931NCI NIH HHS R01 CA248160NICHD NIH HHS R01 HD095463NICHD NIH HHS T32 HD079342NIGMS NIH HHS R01 GM082856NIGMS NIH HHS T32 GM007544NINDS NIH HHS R01 NS100156
6 · The paper itself

Abstract

Quiescence in stem cells is traditionally considered as a state of inactive dormancy or with poised potential. Naive mouse embryonic stem cells (ESCs) can enter quiescence spontaneously or upon inhibition of MYC or fatty acid oxidation, mimicking embryonic diapause in vivo. The molecular underpinning and developmental potential of quiescent ESCs (qESCs) are relatively unexplored. Here we show that qESCs possess an expanded or unrestricted cell fate, capable of generating both embryonic and extraembryonic cell types (e.g., trophoblast stem cells). These cells have a divergent metabolic landscape comparing to the cycling ESCs, with a notable decrease of the one-carbon metabolite S-adenosylmethionine. The metabolic changes are accompanied by a global reduction of H3K27me3, an increase of chromatin accessibility, as well as the de-repression of endogenous retrovirus MERVL and trophoblast master regulators. Depletion of methionine adenosyltransferase Mat2a or deletion of Eed in the polycomb repressive complex 2 results in removal of the developmental constraints towards the extraembryonic lineages. Our findings suggest that quiescent ESCs are not dormant but rather undergo an active transition towards an unrestricted cell fate.

Indexed as

ChromatinEmbryonic Stem CellsAnimalsCell DifferentiationMiceMouse Embryonic Stem CellsPolycomb Repressive Complex 2S-AdenosylmethionineChromatinPolycomb Repressive Complex 2S-Adenosylmethionine

Identifiers

PMID38409226
PMCPMC10897426
OpenAlexW4392163844

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.