Evidence map›Paper›PMID 38408730›Full record

ArticleThe Journal of nutrition2024

Identification of Genes Responding to Iron or Choline Treatment for Early-Life Iron Deficiency in the Male Rat Hippocampal Transcriptomes.

Shirelle X Liu, Natalia Calixto Mancipe, Tate Gisslen, Michael K Georgieff, Phu V Tran

Open access · greenAbstract read
In one paragraph

Article in The Journal of nutrition, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shirelle X LiuDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States.
Natalia Calixto MancipeResearch Informatic Solutions, Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN, United States.
Tate GisslenDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States.
Michael K GeorgieffDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States.
Phu V TranDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States. Electronic address: tranx271@umn.edu.
University of Minnesota · US

Funding

NEWBORN IRON DEFICIENCYR01HD029421 · NICHD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GEORGIEFF, MICHAEL K. · 2000 to 2015
$4.4M
Roles of Iron-Dependent PHD and JARID in Early-Life Iron Deficiency-Induced Adult Neural Gene DysregulationR01NS099178 · NINDS · UNIVERSITY OF MINNESOTA · PI TRAN, PHU V. · 2017 to 2021
$1.6M
NICHD NIH HHS R01 HD029421NINDS NIH HHS R01 NS099178
6 · The paper itself

Abstract

backgroundDevelopmental iron deficiency (ID) is associated with long-term cognitive and affective behavioral impairments in humans. Preclinical studies have shown that developmental ID has short- and long-term effects on gene regulation. Prenatal choline supplementation partially rescues early-life ID-induced cognitive deficits in adult male rats.

objectivesTo identify acute and long-term changes in biological processes regulated by developmental ID and modifiable by choline.

methodsThis study compares the hippocampal transcriptomes of postnatal day (P) 15 iron-deficient (acute) and P65 formerly ID (persistent) rats with or without prenatal choline treatment. Pregnant rats were fed an ID (4 mg/kg Fe) or iron-sufficient (IS) (200 mg/kg Fe) diet from gestational day (G) 2 to P7 with or without choline supplementation (5 g/kg choline) from G11 to G18. Hippocampi were collected from P15 or P65 offspring and analyzed for gene expression by RNA sequencing.

resultsDevelopmental ID-induced changes suggested modified activity of oxidative phosphorylation and fatty acid metabolism. Prenatal choline supplementation induced robust changes in gene expression, particularly in iron-deficient animals, where it partially mitigated the early-life ID-dysregulated genes. Choline supplementation also altered the hippocampal transcriptome in the IS rats, with indications for both beneficial and adverse effects.

conclusionsThis study provided global assessments of gene expression regulated by iron and choline. Our new findings highlight genes responding to iron or choline treatments, including a potentially novel choline-regulated transporter (IPO7), with shared effects on neuroinflammation in the male rat hippocampus.

Indexed as

Iron DeficienciesPrenatal Exposure Delayed EffectsAnimalsAnimals, NewbornCholineFemaleHippocampusHumansIronMalePregnancyRatsRats, Sprague-DawleyTranscriptomeVitaminsCholineIronVitaminscholinehippocampusiron deficiencyregulationtranscriptome

Identifiers

PMID38408730
PMCPMC11007743
OpenAlexW4392135875

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.