Evidence map›Paper›PMID 38408205›Full record

ArticleBiology of reproduction2024

In vitro culture alters cell lineage composition and cellular metabolism of bovine blastocyst†.

Hao Ming, Mingxiang Zhang, Sandeep Rajput, Deirdre Logsdon, Linkai Zhu, William B Schoolcraft, Rebecca L Krisher, Zongliang Jiang, Ye Yuan

Open access · bronzeAbstract read
In one paragraph

Article in Biology of reproduction, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Bovine Endometrium Drives and Responds to Divergence of In Vitro Produced Conceptus Biochemistry.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Bovine embryo productionAnimal reproduction · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Hao MingDepartment of Animal Sciences, Genetics Institute, University of Florida, Gainesville, FL, USA.
Mingxiang ZhangColorado Center for Reproductive Medicine, Lone Tree, CO, USA.
Sandeep RajputColorado Center for Reproductive Medicine, Lone Tree, CO, USA.
Deirdre LogsdonColorado Center for Reproductive Medicine, Lone Tree, CO, USA.
Linkai ZhuDepartment of Animal Sciences, Genetics Institute, University of Florida, Gainesville, FL, USA.
William B SchoolcraftColorado Center for Reproductive Medicine, Lone Tree, CO, USA.
Rebecca L KrisherColorado Center for Reproductive Medicine, Lone Tree, CO, USA.
Zongliang JiangDepartment of Animal Sciences, Genetics Institute, University of Florida, Gainesville, FL, USA.
Ye YuanColorado Center for Reproductive Medicine, Lone Tree, CO, USA.
Colorado Center for Reproductive Medicine · USUniversity of Florida · US

Funding

DNA Methylation at N6-Adenine in Placental Trophoblast DevelopmentR01HD102533 · NICHD · UNIVERSITY OF FLORIDA · PI JIANG, ZONGLIANG, XIAO, ZHUO ANDREW · 2020 to 2024
$3.1M
Colorado Center for Reproductive MedicineNICHD NIH HHS R01 HD102533NIH Eunice Kennedy Shriver National Institute of Child Health and Human Development R01HD102533USDA National Institute of Food and Agriculture 2019-67016-29863
6 · The paper itself

Abstract

Profiling bovine blastocyst transcriptome at the single-cell level has enabled us to reveal the first cell lineage segregation, during which the inner cell mass (ICM), trophectoderm (TE), and an undefined population of transitional cells were identified. By comparing the transcriptome of blastocysts derived in vivo (IVV), in vitro from a conventional culture medium (IVC), and in vitro from an optimized reduced nutrient culture medium (IVR), we found a delay of the cell fate commitment to ICM in the IVC and IVR embryos. Developmental potential differences between IVV, IVC, and IVR embryos were mainly contributed by ICM and transitional cells. Pathway analysis of these non-TE cells between groups revealed highly active metabolic and biosynthetic processes, reduced cellular signaling, and reduced transmembrane transport activities in IVC embryos that may lead to reduced developmental potential. IVR embryos had lower activities in metabolic and biosynthetic processes but increased cellular signaling and transmembrane transport, suggesting these cellular mechanisms may contribute to improved blastocyst development compared to IVC embryos. However, the IVR embryos had compromised development compared to IVV embryos with notably over-active transmembrane transport activities that impaired ion homeostasis.

Indexed as

BlastocystCell LineageEmbryo Culture TechniquesAnimalsCattleCulture MediaEmbryonic DevelopmentFemaleTranscriptomeCulture Mediabovine blastocystin vitro culturelineage specificationreduced nutrient mediumsingle-cell RNA-seq

Identifiers

PMID38408205
PMCPMC11247278
OpenAlexW4392269092

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.