Evidence map›Paper›PMID 38408066›Full record

ArticlePloS one2024

Short noncoding RNAs as predictive biomarkers for the development from inflammatory bowel disease unclassified to Crohn's disease or ulcerative colitis.

Jaslin P James, Lene Buhl Riis, Rolf Søkilde, Mikkel Malham, Estrid Høgdall, Ebbe Langholz, Boye Schnack Nielsen

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jaslin P JamesDepartment of Pathology, Herlev University Hospital, Herlev, Denmark.ORCID 0000-0002-9711-7496
Lene Buhl RiisDepartment of Pathology, Herlev University Hospital, Herlev, Denmark.
Rolf SøkildeBioneer A/S, Hørsholm, Kogle Allé 2, Hørsholm, Denmark.ORCID 0000-0003-3010-3599
Mikkel MalhamThe Pediatric Department, Copenhagen University Hospital-Amager and Hvidovre, Hvidovre, Denmark.ORCID 0000-0002-6956-7676
Estrid HøgdallDepartment of Pathology, Herlev University Hospital, Herlev, Denmark.
Ebbe LangholzInstitute of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.
Boye Schnack NielsenBioneer A/S, Hørsholm, Kogle Allé 2, Hørsholm, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Numerous pathogenic processes are mediated by short noncoding RNAs (sncRNA). Twenty percent of inflammatory bowel disease (IBD) patients are labelled as IBD unclassified (IBDU) at disease onset. Most IBDU patients are reclassified as Crohn's disease (CD) or ulcerative colitis (UC) within few years. Since the therapeutic methods for CD and UC differ, biomarkers that can forecast the categorization of IBDU into CD or UC are highly desired. Here, we investigated whether sncRNAs can predict CD or UC among IBDU patients. 35 IBDU patients who were initially diagnosed with IBDU were included in this retrospective investigation; of them, 12, 15, and 8 were reclassified into CD (IBDU-CD), UC (IBDU-UC), or remained as IBDU (IBDU-IBDU), respectively. Eight IBD patients, were included as references. SncRNA profiling on RNA from mucosal biopsies were performed using Affymetrix miRNA 4.0 array. Selected probe sets were validated using RT-qPCR. Among all patients and only adults, 306 and 499 probe sets respectively were differentially expressed between IBDU-CD and IBDU-UC. Six of the probe sets were evaluated by RT-qPCR, of which miR-182-5p, miR-451a and ENSG00000239080 (snoU13) together with age and sex resulted in an AUC of 78.6% (95% CI: 60-97) in discriminating IBDU-CD from IBDU-UC. Based on the three sncRNAs profile it is possible to predict if IBDU patients within 3 years will be reclassified as CD or UC. We showed that the expression profile of IBDU patients differ from that of definite CD or UC, suggesting that a subgroup of IBDU patients may compose a third unique IBD subtype.

Indexed as

Colitis, UlcerativeCrohn DiseaseInflammatory Bowel DiseasesMicroRNAsRNA, Small UntranslatedAdultBiomarkersHumansRetrospective StudiesBiomarkersMicroRNAsRNA, Small Untranslated

Identifiers

PMID38408066
PMCPMC10896517

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.