Evidence map›Paper›PMID 38407798›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Efficient Generation of CRISPR/Cas9-Mediated Knockout Human Primary Keratinocytes by Electroporation.

Tugay Karakaya, Marta Slaufova, Michela Di Filippo, Paulina Hennig, Gabriele Fenini, Thomas Kündig, Hans-Dietmar Beer

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Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tugay KarakayaDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Marta SlaufovaDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Michela Di FilippoDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Paulina HennigDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Gabriele FeniniDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Thomas KündigDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Hans-Dietmar BeerDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland. Hans-Dietmar.Beer@usz.ch.

Funding

Swiss National Science Foundation 310030_197426
6 · The paper itself

Abstract

Due to their full differentiation capacity in vitro, the culture of human primary keratinocytes (HPKs) represents a physiological model for answering basic biological and dermatological research questions, including those related to skin diseases and the investigation of treatment options. When modified with the CRISPR/Cas9 gene editing approach and cultivated in organotypic 3D epidermal equivalents (EEs), these human cells have the potential to replace established mouse models. However, even when cultivated on feeder cells, HPKs have only a low proliferation capacity in 2D culture, limiting their application potential. This is particularly true for CRISPR/Cas9-modified HPKs, whose generation commonly requires selection of targeted cells, negatively affecting their lifespan. Here, we describe a robust protocol for the rapid, simple, and efficient generation of single- and multi-gene CRISPR/Cas9 knockout HPKs by electroporation of ribonucleoprotein (RNP) complexes, which comprise one or multiple guide RNAs (gRNAs) and Cas9 protein. Unlike DNA transfection or virus-based targeting strategies, electroporation of RNPs represents a targeting approach that minimizes immunological and toxic side effects. Using efficient gRNAs results in the generation of HPKs with a high yield of knockout cells, allowing for their immediate use in experiments without requiring the laborious process of selecting targeted cells or maintaining a feeder cell culture. Furthermore, the use of RNPs and their delivery via electroporation minimizes off-target and other unspecific effects, preventing unintended genomic alterations. Most importantly, CRISPR/Cas9 knockout HPKs generated with this protocol have the ability to form a fully differentiated epidermis in 3D, thus facilitating the understanding of specific protein functions in a highly physiological human skin model. Alternatively, this approach proves valuable for generating models of mono- or polygenic skin diseases via knockouts, providing insights into the underlying molecular mechanisms and facilitating the development of novel therapeutic approaches.

Indexed as

CRISPR-Cas SystemsElectroporationGene EditingGene Knockout TechniquesKeratinocytesRNA, Guide, CRISPR-Cas SystemsCell Culture TechniquesCell DifferentiationCells, CulturedHumansRNA, Guide, CRISPR-Cas SystemsCRISPR/Cas9ElectroporationEpidermal equivalentsHuman primary keratinocytesKnockout

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.