Evidence map›Paper›PMID 38405857›Full record

ArticlebioRxiv : the preprint server for biology2024

"Evaluating the Benefits and Limits of Multiple Displacement Amplification with Whole-Genome Oxford Nanopore Sequencing".

Fiifi A Dadzie, Megan S Beaudry, Alex Deyanov, Haley Slanis, Minh Q Duong, Randi Turner, Asis Khan, Cesar A Arias, Jessica C Kissinger, Travis C Glenn and 1 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Fiifi A DadzieDepartment of Genetics, University of Georgia, Athens, GA USA 30602.ORCID 0000-0002-1556-8323
Megan S BeaudryDepartment of Environmental Health Science, University of Georgia, Athens, GA USA 30602.ORCID 0000-0002-5707-8648
Alex DeyanovCenter for Infectious Disease, Houston Methodist Research Institute, Houston, TX USA 77030.ORCID 0000-0002-7579-2351
Haley SlanisCenter for Infectious Disease, Houston Methodist Research Institute, Houston, TX USA 77030.ORCID 0009-0005-9740-8508
Minh Q DuongCenter for Infectious Disease, Houston Methodist Research Institute, Houston, TX USA 77030.ORCID 0009-0001-1811-2209
Randi TurnerCenter for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA USA.ORCID 0000-0003-2441-5115
Asis KhanUSA Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Service, Animal Parasitic Disease Laboratory, Beltsville, MD USA.ORCID 0000-0002-9862-2507
Cesar A AriasCenter for Infectious Disease, Houston Methodist Research Institute, Houston, TX USA 77030.ORCID 0000-0001-9054-9774
Jessica C KissingerDepartment of Genetics, University of Georgia, Athens, GA USA 30602.ORCID 0000-0002-6413-1101
Travis C GlennDepartment of Genetics, University of Georgia, Athens, GA USA 30602.ORCID 0000-0001-7725-3637
Rodrigo de Paula BaptistaCenter for Infectious Disease, Houston Methodist Research Institute, Houston, TX USA 77030.ORCID 0000-0002-1806-8260
Houston Methodist · USUniversity of Georgia · USAgricultural Research Service · US

Funding

T32 Predoctoral Training Grant in GeneticsT32GM142623 · NIGMS · UNIVERSITY OF GEORGIA · PI Kelly A Dyer, Mary Grace Goll · 2022 to 2026
$2.1M
Capturing the genomic variation present in Cryptosporidium and cryptosporidiosisR01AI148667 · NIAID · UNIVERSITY OF GEORGIA · PI GLENN, TRAVIS C., KISSINGER, JESSICA C · 2020 to 2023
$1.8M
NIAID NIH HHS R01 AI148667NIGMS NIH HHS T32 GM142623
6 · The paper itself

Abstract

Multiple Displacement Amplification (MDA) outperforms conventional PCR in long fragment and whole genome amplification which makes it attractive to couple with long-read sequencing of samples with limited quantities of DNA to obtain improved genome assemblies. Here, we explore the efficacy and limits of MDA for genome sequence assembly using Oxford Nanopore Technologies (ONT) rapid library preparations and minION sequencing. We successfully generated almost complete genome sequences for all organisms examined, including

Indexed as

ApicomplexaEnterobacteralesEnterococcaceaeInfectious Diseaseslow abundance DNALRS Special Issue

Identifiers

PMID38405857
PMCPMC10888933
OpenAlexW4391747238

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.