Evidence map›Paper›PMID 38405825›Full record

ArticlebioRxiv : the preprint server for biology2024

Surveying the landscape of RNA isoform diversity and expression across 9 GTEx tissues using long-read sequencing data.

Madeline L Page, Bernardo Aguzzoli Heberle, J Anthony Brandon, Mark E Wadsworth, Lacey A Gordon, Kayla A Nations, Mark T W Ebbert

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 10 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Madeline L PageSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.ORCID 0000-0001-9990-1500
Bernardo Aguzzoli HeberleSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.ORCID 0000-0002-6177-9316
J Anthony BrandonSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.
Mark E WadsworthSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.ORCID 0000-0001-6358-1111
Lacey A GordonSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.
Kayla A NationsSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.
Mark T W EbbertSanders-Brown Center on Aging, University of Kentucky, Lexington, KY.ORCID 0000-0001-9158-4440
University of Kentucky · US

Funding

University of Kentucky Alzheimer's Disease Research CenterP30AG072946 · NIA · UNIVERSITY OF KENTUCKY · PI LINDA J VAN ELDIK · 2021 to 2026
$23.5M
Using long-range technologies as a multi-omic approach to understand Alzheimer’s disease in brain tissueR01AG068331 · NIA · UNIVERSITY OF KENTUCKY · PI EBBERT, MARK T W · 2020 to 2024
$3.0M
Understanding how structural mutations and individual RNA isoformsare involved in human health and diseaseR35GM138636 · NIGMS · UNIVERSITY OF KENTUCKY · PI Mark T W Ebbert · 2020 to 2026
$2.9M
Genetic Architecture of Aging-Related TDP-43 and Mixed Pathology DementiaRF1AG082339 · NIA · UNIVERSITY OF KENTUCKY · PI FARDO, DAVID WILLIAM, NELSON, PETER T. · 2023 to 2023
$1.7M
NIA NIH HHS P30 AG072946NIA NIH HHS R01 AG068331NIA NIH HHS RF1 AG082339NIGMS NIH HHS R35 GM138636
6 · The paper itself

Abstract

Even though alternative RNA splicing was discovered nearly 50 years ago (1977), we still understand very little about most isoforms arising from a single gene, including in which tissues they are expressed and if their functions differ. Human gene annotations suggest remarkable transcriptional complexity, with approximately 252,798 distinct RNA isoform annotations from 62,710 gene bodies (Ensembl v109; 2023), emphasizing the need to understand their biological effects. For example, 256 gene bodies have ≥50 annotated isoforms and 30 have ≥100, where one protein-coding gene (

Identifiers

PMID38405825
PMCPMC10888753
OpenAlexW4391841869

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.