Evidence map›Paper›PMID 38403625›Full record

ArticleScientific reports2024

Quantitative trait loci and genomic prediction for grain sugar and mineral concentrations of cowpea [Vigna unguiculata (L.) Walp.].

Bao-Lam Huynh, James C R Stangoulis, Tri D Vuong, Haiying Shi, Henry T Nguyen, Tra Duong, Ousmane Boukar, Francis Kusi, Benoit J Batieno, Ndiaga Cisse and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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  4. Combating Root-Knot Nematodes (Plants (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 6 countries.

Bao-Lam HuynhDepartment of Nematology, University of California, Riverside, CA, USA. baolam.huynh@ucr.edu.
James C R StangoulisCollege of Science and Engineering, Flinders University, Bedford Park, SA, Australia.
Tri D VuongDivision of Plant Science and Technology and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, USA.
Haiying ShiDivision of Plant Science and Technology and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, USA.
Henry T NguyenDivision of Plant Science and Technology and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, USA.
Tra DuongDepartment of Nematology, University of California, Riverside, CA, USA.
Ousmane BoukarInternational Institute of Tropical Agriculture, Kano, Nigeria.ORCID 0000-0003-0234-4264
Francis KusiCSIR-Savanna Agricultural Research Institute, Tamale, Ghana.
Benoit J BatienoInstitut de l'Environnement et de Recherches Agricoles, Kamboinse, Burkina Faso.
Ndiaga CisseInstitut Senegalais de Recherches Agricoles, Thies, Senegal.
Mouhamadou Moussa DiangarInstitut Senegalais de Recherches Agricoles, Thies, Senegal.
Frederick Justice AwukuCSIR-Savanna Agricultural Research Institute, Tamale, Ghana.
Patrick AttamahCSIR-Savanna Agricultural Research Institute, Tamale, Ghana.
José CrossaInternational Maize and Wheat Improvement Center, Mexico City, Mexico.
Paulino Pérez-RodríguezColegio de Postgraduados, Montecillo, Edo. de Mexico, Mexico.
Jeffrey D EhlersBill and Melinda Gates Foundation, Seattle, WA, USA.
Philip A RobertsDepartment of Nematology, University of California, Riverside, CA, USA. philip.roberts@ucr.edu.
University of California, Riverside · USUniversity of Missouri · USInstitut Sénégalais de Recherches Agricoles · SNCentro Internacional de Mejoramiento de Maíz Y Trigo · MXColegio de Postgraduados · MXFlinders University · AUGates Foundation · USInstitut de l'Environnement et Recherches Agricoles · BFInternational Institute of Tropical Agriculture · NG

Funding

Feed the Future Innovation Lab for Climate Resilient Cowpea USAID Cooperative Agreement AID-OAA-A-13-00070Feed the Future Innovation Lab for Legume Systems Research USAID Cooperative Agreement 7200AA18LE00003Innovation Lab for Collaborative Research on Grain Legumes USAID Cooperative Agreement EDH-A-00-07-00005
6 · The paper itself

Abstract

Development of high yielding cowpea varieties coupled with good taste and rich in essential minerals can promote consumption and thus nutrition and profitability. The sweet taste of cowpea grain is determined by its sugar content, which comprises mainly sucrose and galacto-oligosaccharides (GOS) including raffinose and stachyose. However, GOS are indigestible and their fermentation in the colon can produce excess intestinal gas, causing undesirable bloating and flatulence. In this study, we aimed to examine variation in grain sugar and mineral concentrations, then map quantitative trait loci (QTLs) and estimate genomic-prediction (GP) accuracies for possible application in breeding. Grain samples were collected from a multi-parent advanced generation intercross (MAGIC) population grown in California during 2016-2017. Grain sugars were assayed using high-performance liquid chromatography. Grain minerals were determined by inductively coupled plasma-optical emission spectrometry and combustion. Considerable variation was observed for sucrose (0.6-6.9%) and stachyose (2.3-8.4%). Major QTLs for sucrose (QSuc.vu-1.1), stachyose (QSta.vu-7.1), copper (QCu.vu-1.1) and manganese (QMn.vu-5.1) were identified. Allelic effects of major sugar QTLs were validated using the MAGIC grain samples grown in West Africa in 2017. GP accuracies for minerals were moderate (0.4-0.58). These findings help guide future breeding efforts to develop mineral-rich cowpea varieties with desirable sugar content.

Indexed as

Quantitative Trait LociVignaEdible GrainGenomicsMineralsPlant BreedingSucroseSugarsMineralsSucroseSugars

Identifiers

PMID38403625
PMCPMC10894872
OpenAlexW4392181136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.