Evidence map›Paper›PMID 38400062›Full record

ArticleViruses2024

HIV-1 Proviral Genome Engineering with CRISPR-Cas9 for Mechanistic Studies.

Usman Hyder, Ashutosh Shukla, Ashwini Challa, Iván D'Orso

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Usman HyderDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.ORCID 0000-0002-7655-1533
Ashutosh ShuklaDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Ashwini ChallaDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Iván D'OrsoDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.ORCID 0000-0002-1409-2351
The University of Texas Southwestern Medical Center · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Kathryn Ann O'Donnell · 2010 to 2026
$53.7M
Transcriptional regulatory mechanisms shaping HIV proviral fateR01AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2015 to 2024
$4.6M
Transcriptional regulatory mechanisms shaping HIV proviral fateR37AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Ivan D'Orso · 2025 to 2026
$1.0M
A chemical genetics approach for studies of HIV-1 latencyR21AI175042 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2023 to 2024
$451k
Exploiting Oncogenic Chromatin Regulators in Cancer Initiation and ProgressionF99CA264296 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HYDER, USMAN · 2021 to 2022
$72k
NCI NIH HHS F99 CA264296NCI NIH HHS P30 CA142543NIAID NIH HHS R01 AI114362NIAID NIH HHS R21 AI175042NIAID NIH HHS R37 AI114362NIH HHS F99CA264296NIH HHS R01AI114362NIH HHS R21AI175042
6 · The paper itself

Abstract

HIV-1 latency remains a barrier to a functional cure because of the ability of virtually silent yet inducible proviruses within reservoir cells to transcriptionally reactivate upon cell stimulation. HIV-1 reactivation occurs through the sequential action of host transcription factors (TFs) during the "host phase" and the viral TF Tat during the "viral phase", which together facilitate the positive feedback loop required for exponential transcription, replication, and pathogenesis. The sequential action of these TFs poses a challenge to precisely delineate the contributions of the host and viral phases of the transcriptional program to guide future mechanistic and therapeutic studies. To address this limitation, we devised a genome engineering approach to mutate

Indexed as

HIV-1HIV InfectionsCRISPR-Cas SystemsHumansProvirusesVirus LatencyCas9CRISPRgenome engineeringHIV-1Tattranscriptionviruses

Identifiers

PMID38400062
PMCPMC10892460
OpenAlexW4391815213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.