Evidence map›Paper›PMID 38400004›Full record

ArticleViruses2024

Unveiling CRESS DNA Virus Diversity in Oysters by Virome.

Peng Zhu, Chang Liu, Guang-Feng Liu, Hong Liu, Ke-Ming Xie, Hong-Sai Zhang, Xin Xu, Jian Xiao, Jing-Zhe Jiang

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
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  4. Viral metagenomic analysis of fecal samples fromFrontiers in cellular and infection microbiology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Peng ZhuCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Chang LiuKey Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510000, China.
Guang-Feng LiuKey Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510000, China.
Hong LiuAnimal and Plant Inspection and Quarantine Technology Centre, Shenzhen Customs, Shenzhen 518000, China.
Ke-Ming XieKey Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510000, China.
Hong-Sai ZhangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Xin XuLivestock, Aquaculture and Technology Promotion and Service Center of Conghua District, Guangzhou 510000, China.
Jian XiaoLivestock, Aquaculture and Technology Promotion and Service Center of Conghua District, Guangzhou 510000, China.
Jing-Zhe JiangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.ORCID 0000-0001-5260-7822
Guangdong Pharmaceutical University · CNMinistry of Agriculture and Rural Affairs · CNShenzhen Academy of Inspection and Quarantine · CNSun Yat-sen University · CN

Funding

Central Public-Interest Scientific Institution Basal Research Fund, CAFS 2021SD05Central Public-Interest Scientific Institution Basal Research Fund, CAFS 2023TD44Key-Area Research and Development Program of Guangdong Province 2022B1111030001National Natural Science Foundation of China 31972847
6 · The paper itself

Abstract

Oysters that filter feed can accumulate numerous pathogens, including viruses, which can serve as a valuable viral repository. As oyster farming becomes more prevalent, concerns are mounting about diseases that can harm both cultivated and wild oysters. Unfortunately, there is a lack of research on the viruses and other factors that can cause illness in shellfish. This means that it is harder to find ways to prevent these diseases and protect the oysters. This is part of a previously started project, the Dataset of Oyster Virome, in which we further study 30 almost complete genomes of oyster-associated CRESS DNA viruses. The replication-associated proteins and capsid proteins found in CRESS DNA viruses display varying evolutionary rates and frequently undergo recombination. Additionally, some CRESS DNA viruses have the capability for cross-species transmission. A plethora of unclassified CRESS DNA viruses are detectable in transcriptome libraries, exhibiting higher levels of transcriptional activity than those found in metagenome libraries. The study significantly enhances our understanding of the diversity of oyster-associated CRESS DNA viruses, emphasizing the widespread presence of CRESS DNA viruses in the natural environment and the substantial portion of CRESS DNA viruses that remain unidentified. This study's findings provide a basis for further research on the biological and ecological roles of viruses in oysters and their environment.

Indexed as

BrassicaceaeVirusesDNA, ViralDNA VirusesGenome, ViralPhylogenyViromeDNA, ViralCapCRESS DNA virusoysterphylogenetic treeRepvirome

Identifiers

PMID38400004
PMCPMC10892194
OpenAlexW4391434196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.