Evidence map›Paper›PMID 38399957›Full record

ArticleViruses2024

Characterization of Dengue Virus 4 Cases in Paraguay, 2019-2020.

Alejandra Rojas, John Shen, Fátima Cardozo, Cynthia Bernal, Oliver Caballero, Sara Ping, Autum Key, Ali Haider, Yvalena de Guillén, Patricia Langjahr and 12 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 2 countries.

Alejandra RojasInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
John ShenRollins School of Public Health, Emory University, Atlanta, GA 30322, USA.
Fátima CardozoInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
Cynthia BernalInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.ORCID 0000-0002-6627-670X
Oliver CaballeroInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
Sara PingDepartment of Medicine, Division of Infectious Diseases, Emory University, 1760 Haygood Drive NE, Room E-169, Bay E-1, Atlanta, GA 30322, USA.
Autum KeyDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.
Ali HaiderDepartment of Medicine, Division of Infectious Diseases, Emory University, 1760 Haygood Drive NE, Room E-169, Bay E-1, Atlanta, GA 30322, USA.
Yvalena de GuillénInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
Patricia LangjahrFacultad de Ciencias Químicas, Universidad Nacional de Asunción, Campus Universitario, San Lorenzo 111421, Paraguay.ORCID 0000-0001-9793-3373
Maria Eugenia AcostaInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.ORCID 0000-0003-0801-4397
Laura AriaInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
Laura MendozaInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
Malvina PáezInstituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción, San Lorenzo 111241, Paraguay.
Marta Von-HorochDepartamento de Epidemiología, Hospital Central-Instituto de Previsión Social, Asunción 001531, Paraguay.
Patricia LuraschiDepartamento de Epidemiología, Hospital Central-Instituto de Previsión Social, Asunción 001531, Paraguay.
Sandra CabralDepartamento de Epidemiología, Hospital Central-Instituto de Previsión Social, Asunción 001531, Paraguay.
María Cecilia SánchezDepartamento de Laboratorio de Análisis Clínicos, Hospital Central-Instituto de Previsión Social, Asunción 001531, Paraguay.
Aurelia TorresDepartamento de Laboratorio de Análisis Clínicos, Hospital Central-Instituto de Previsión Social, Asunción 001531, Paraguay.
Benjamin A PinskyDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-8751-4810
Anne PiantadosiDepartment of Medicine, Division of Infectious Diseases, Emory University, 1760 Haygood Drive NE, Room E-169, Bay E-1, Atlanta, GA 30322, USA.
Jesse J WaggonerRollins School of Public Health, Emory University, Atlanta, GA 30322, USA.ORCID 0000-0002-0244-5957
Universidad Nacional de Asunción · PYEmory University · USIPS Central · PYStanford University · US

Funding

American Asian Centers for Arbovirus Research and Enhanced Surveillance (A2CARES)U01AI151788 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Josefina Coloma, Eva Harris · 2020 to 2026
$9.6M
Detection and Characterization of Flavivirus and Alphavirus Infections in Acute Suspected Arboviral Cases or Neurological Disease, Central Department, ParaguayR21AI146443 · NIAID · EMORY UNIVERSITY · PI WAGGONER, JESSE · 2019 to 2020
$411k
Doris Duke Charitable Foundation 2019089NIAID NIH HHS R21 AI146443NIAID NIH HHS U01 AI151788
6 · The paper itself

Abstract

In 2019-2020, dengue virus (DENV) type 4 emerged to cause the largest DENV outbreak in Paraguay's history. This study sought to characterize dengue relative to other acute illness cases and use phylogenetic analysis to understand the outbreak's origin. Individuals with an acute illness (≤7 days) were enrolled and tested for DENV nonstructural protein 1 (NS1) and viral RNA by real-time RT-PCR. Near-complete genome sequences were obtained from 62 DENV-4 positive samples. From January 2019 to March 2020, 799 participants were enrolled: 253 dengue (14 severe dengue, 5.5%) and 546 other acute illness cases. DENV-4 was detected in 238 dengue cases (94.1%). NS1 detection by rapid test was 52.5% sensitive (53/101) and 96.5% specific (387/401) for dengue compared to rRT-PCR. DENV-4 sequences were grouped into two clades within genotype II. No clustering was observed based on dengue severity, location, or date. Sequences obtained here were most closely related to 2018 DENV-4 sequences from Paraguay, followed by a 2013 sequence from southern Brazil. DENV-4 can result in large outbreaks, including severe cases, and is poorly detected with available rapid diagnostics. Outbreak strains seem to have been circulating in Paraguay and Brazil prior to 2018, highlighting the importance of sustained DENV genomic surveillance.

Indexed as

DengueDengue VirusAcute DiseaseDisease OutbreaksGenotypeHumansParaguayPhylogenydengueNS1Paraguayphylogenetic analysisrRT-PCR

Identifiers

PMID38399957
PMCPMC10892180
OpenAlexW4391230018

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.