Evidence map›Paper›PMID 38398122›Full record

ArticleCancers2024

Machine-Learning-Based Classification Model to Address Diagnostic Challenges in Transbronchial Lung Biopsy.

Hisao Sano, Ethan N Okoshi, Yuri Tachibana, Tomonori Tanaka, Kris Lami, Wataru Uegami, Yoshio Ohta, Luka Brcic, Andrey Bychkov, Junya Fukuoka

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Hisao SanoDepartment of Pathology Informatics, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588, Nagasaki, Japan.
Ethan N OkoshiDepartment of Pathology Informatics, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588, Nagasaki, Japan.ORCID 0009-0008-2437-4345
Yuri TachibanaDepartment of Pathology Informatics, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588, Nagasaki, Japan.
Tomonori TanakaDepartment of Diagnostic Pathology, Izumi City General Hospital, Izumi 594-0073, Osaka, Japan.
Kris LamiDepartment of Pathology Informatics, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588, Nagasaki, Japan.ORCID 0000-0001-9191-3339
Wataru UegamiDepartment of Pathology, Kameda Medical Center, Kamogawa 296-8602, Chiba, Japan.
Yoshio OhtaDepartment of Diagnostic Pathology, Izumi City General Hospital, Izumi 594-0073, Osaka, Japan.
Luka BrcicDiagnostic and Research Institute of Pathology, Medical University of Graz, 8010 Graz, Austria.ORCID 0000-0002-9098-8416
Andrey BychkovDepartment of Pathology, Kameda Medical Center, Kamogawa 296-8602, Chiba, Japan.ORCID 0000-0002-4203-5696
Junya FukuokaDepartment of Pathology Informatics, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588, Nagasaki, Japan.
Kameda Medical Center · JPIzumi City General Hospital · JPNagasaki University · JPMedical University of Graz · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhen obtaining specimens from pulmonary nodules in TBLB, distinguishing between benign samples and mis-sampling from a tumor presents a challenge. Our objective is to develop a machine-learning-based classifier for TBLB specimens.

methodsThree pathologists assessed six pathological findings, including interface bronchitis/bronchiolitis (IB/B), plasma cell infiltration (PLC), eosinophil infiltration (Eo), lymphoid aggregation (Ly), fibroelastosis (FE), and organizing pneumonia (OP), as potential histologic markers to distinguish between benign and malignant conditions. A total of 251 TBLB cases with defined benign and malignant outcomes based on clinical follow-up were collected and a gradient-boosted decision-tree-based machine learning model (XGBoost) was trained and tested on randomly split training and test sets.

resultsFive pathological changes showed independent, mild-to-moderate associations (AUC ranging from 0.58 to 0.75) with benign conditions, with IB/B being the strongest predictor. On the other hand, FE emerged to be the sole indicator of malignant conditions with a mild association (AUC = 0.66). Our model was trained on 200 cases and tested on 51 cases, achieving an AUC of 0.78 for the binary classification of benign vs. malignant on the test set.

conclusionThe machine-learning model developed has the potential to distinguish between benign and malignant conditions in TBLB samples excluding the presence or absence of tumor cells, thereby improving diagnostic accuracy and reducing the burden of repeated sampling procedures for patients.

Indexed as

decision-tree based classifiersDelphi methodinterface bronchitis/bronchiolitis (IB/B)non-diagnostic samplestransbronchial lung biopsy (TBLB)

Identifiers

PMID38398122
PMCPMC10886691
OpenAlexW4391679293

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.