Evidence map›Paper›PMID 38396632›Full record

ArticleInternational journal of molecular sciences2024

Application of Flow Cytometry Using Advanced Chromatin Analyses for Assessing Changes in Sperm Structure and DNA Integrity in a Porcine Model.

Estíbaliz Lacalle, Estela Fernández-Alegre, Belén Gómez-Giménez, Manuel Álvarez-Rodríguez, Beatriz Martín-Fernández, Cristina Soriano-Úbeda, Felipe Martínez-Pastor

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Estíbaliz LacalleInstitute of Animal Health and Cattle Development (INDEGSAL), University of León, 24071 León, Spain.
Estela Fernández-AlegreBianor Biotech SL, 24071 León, Spain.ORCID 0000-0002-2223-1788
Belén Gómez-GiménezInstitute of Animal Health and Cattle Development (INDEGSAL), University of León, 24071 León, Spain.ORCID 0000-0001-5177-1671
Manuel Álvarez-RodríguezDepartment of Animal Reproduction, National Institute for Agricultural and Food Research and Technology, Spanish Scientific Research Council (INIA-CSIC), 28040 Madrid, Spain.ORCID 0000-0003-0120-354X
Beatriz Martín-FernándezInstitute of Animal Health and Cattle Development (INDEGSAL), University of León, 24071 León, Spain.ORCID 0000-0002-1904-6194
Cristina Soriano-ÚbedaDepartment of Medicine, Surgery and Veterinary Anatomy (Animal Medicine and Surgery), University of León, 24071 León, Spain.ORCID 0000-0003-2880-3342
Felipe Martínez-PastorInstitute of Animal Health and Cattle Development (INDEGSAL), University of León, 24071 León, Spain.ORCID 0000-0003-2987-4302
Universidad de León · ESBiogas Fuel Cell (Spain) · ESInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ES

Funding

Junta de Castilla y León LE023P20Ministerio de Ciencia e Innovación DIN2020-011558Ministerio de Ciencia e Innovación RTI2018-095183-B-I00
6 · The paper itself

Abstract

Chromatin status is critical for sperm fertility and reflects spermatogenic success. We tested a multivariate approach for studying pig sperm chromatin structure to capture its complexity with a set of quick and simple techniques, going beyond the usual assessment of DNA damage. Sperm doses from 36 boars (3 ejaculates/boar) were stored at 17 °C and analyzed on days 0 and 11. Analyses were: CASA (motility) and flow cytometry to assess sperm functionality and chromatin structure by SCSA (%DFI, DNA fragmentation; %HDS, chromatin maturity), monobromobimane (mBBr, tiol status/disulfide bridges between protamines), chromomycin A3 (CMA3, protamination), and 8-hydroxy-2'-deoxyguanosine (8-oxo-dG, DNA oxidative damage). Data were analyzed using linear models for the effects of boar and storage, correlations, and multivariate analysis as hierarchical clustering and principal component analysis (PCA). Storage reduced sperm quality parameters, mainly motility, with no critical oxidative stress increases, while chromatin status worsened slightly (%DFI and 8-oxo-dG increased while mBBr MFI-median fluorescence intensity-and disulfide bridge levels decreased). Boar significantly affected most chromatin variables except CMA3; storage also affected most variables except %HDS. At day 0, sperm chromatin variables clustered closely, except for CMA3, and %HDS and 8-oxo-dG correlated with many variables (notably, mBBr). After storage, the relation between %HDS and 8-oxo-dG remained, but correlations among other variables disappeared, and mBBr variables clustered separately. The PCA suggested a considerable influence of mBBr on sample variance, especially regarding storage, with SCSA and 8-oxo-dG affecting between-sample variability. Overall, CMA3 was the least informative, in contrast with results in other species. The combination of DNA fragmentation, DNA oxidation, chromatin compaction, and tiol status seems a good candidate for obtaining a complete picture of pig sperm nucleus status. It raises many questions for future molecular studies and deserves further research to establish its usefulness as a fertility predictor in multivariate models. The usefulness of CMA3 should be clarified.

Indexed as

BiofilmsBridged Bicyclo CompoundsChromatin8-Hydroxy-2'-DeoxyguanosineAnimalsBioreactorsDisulfidesDNADNA FragmentationFlow CytometryMaleSemenSpermatozoaSwine8-Hydroxy-2'-DeoxyguanosineBridged Bicyclo CompoundsChromatinDisulfidesDNAmonobromobimaneboarchromatin statuscooled storageDNA fragmentationflow cytometrymultivariate analysisoxidative stressspermatozoasperm functionality

Identifiers

PMID38396632
PMCPMC10888687
OpenAlexW4391574611

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.