Evidence map›Paper›PMID 38395996›Full record

ArticleScientific data2024

Chromosome-level genome assembly of the silver pomfret Pampus argenteus.

Jiehong Wei, Yongshuang Xiao, Jing Liu, Angel Herrera-Ulloa, Kar-Hoe Loh, Kuidong Xu

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Silver Pomfret (Animals : an open access journal from MDPI · 2025
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Jiehong Wei *Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Yongshuang Xiao *Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Jing LiuInstitute of Oceanology, Chinese Academy of Sciences, Qingdao, China. jliu@qdio.ac.cn.
Angel Herrera-UlloaEscuela de Ciencias Biológicas, Universidad Nacional, San José, Costa Rica.
Kar-Hoe LohInstitute of Ocean and Earth Sciences, Universiti Malaya, Kuala Lumpur, Malaysia.
Kuidong XuInstitute of Oceanology, Chinese Academy of Sciences, Qingdao, China. kxu@qdio.ac.cn.
Institute of Oceanology · CNUniversidad Nacional · CRUniversity of Malaya · MY

Funding

National Natural Science Foundation of China (National Science Foundation of China) No. 31872195National Natural Science Foundation of China (National Science Foundation of China) No. 32270472
6 · The paper itself

Abstract

Pampus argenteus (Euphrasen, 1788) is one of the major fishery species in coastal China. Pampus argenteus has a highly specialized morphology, and its declining fishery resources have encouraged massive research efforts on its aquacultural biology. In this study, we reported the first high-quality chromosome-level genome of P. argenteus obtained by integrating Illumina, PacBio HiFi, and Hi-C sequencing techniques. The final size of the genome was 518.06 Mb, with contig and scaffold N50 values of 20.47 and 22.86 Mb, respectively. The sequences were anchored and oriented onto 24 pseudochromosomes based on Hi-C data corresponding to the 24-chromatid karyotype of P. argenteus. A colinear relationship was observed between the P. argenteus genome and that of a closely related species (Scomber japonicus). A total of 24,696 protein-coding genes were identified from the genome, 98.9% of which were complete BUSCOs. This report represents the first case of high-quality chromosome-level genome assembly for P. argenteus and can provide valuable information for future evolutionary, conservation, and aquacultural research.

Indexed as

GenomePerciformesAnimalsChromosomesPhylogenySequence Analysis, DNA

Identifiers

PMID38395996
PMCPMC10891316
OpenAlexW4392109768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.