Evidence map›Paper›PMID 38395893›Full record

ArticleNature communications2024

Metabolomic machine learning predictor for diagnosis and prognosis of gastric cancer.

Yangzi Chen, Bohong Wang, Yizi Zhao, Xinxin Shao, Mingshuo Wang, Fuhai Ma, Laishou Yang, Meng Nie, Peng Jin, Ke Yao and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 163 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed, 8 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 8 syntheses or guidelines pooled it.

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  13. Sphingomyelin as a key negative mediator in atrial fibrillation via lipid profiling analysis and functional identification.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2026
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103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Yangzi Chen *School of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China.
Bohong Wang *School of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China.
Yizi Zhao *School of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China.
Xinxin Shao *National Cancer Center, National Clinical Research Center for Cancer, Cancer Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730, China.
Mingshuo Wang *School of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China.
Fuhai Ma *National Cancer Center, National Clinical Research Center for Cancer, Cancer Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730, China.
Laishou YangDepartment of Colorectal Surgery, Harbin Medical University Cancer Hospital, Harbin, 150081, China.
Meng NieSchool of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China.ORCID 0000-0003-2267-5810
Peng JinNational Cancer Center, National Clinical Research Center for Cancer, Cancer Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730, China.
Ke YaoSchool of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China.ORCID 0000-0003-2638-2978
Haibin SongDepartment of Gastrointestinal Surgery, Harbin Medical University Cancer Hospital, Harbin, 150081, China.
Shenghan LouDepartment of Colorectal Surgery, Harbin Medical University Cancer Hospital, Harbin, 150081, China.
Hang WangDepartment of Colorectal Surgery, Harbin Medical University Cancer Hospital, Harbin, 150081, China.
Tianshu YangShanghai Key Laboratory of Metabolic Remodeling and Health, Institute of Metabolism and Integrative Biology, Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.
Yantao TianNational Cancer Center, National Clinical Research Center for Cancer, Cancer Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730, China. tianyantao@cicams.ac.cn.ORCID 0000-0002-7189-3999
Peng HanDepartment of Oncology Surgery, Harbin Medical University Cancer Hospital, Harbin, 150081, China. leospiv@hrbmu.edu.cn.ORCID 0009-0002-6742-0539
Zeping HuSchool of Pharmaceutical Sciences, Tsinghua University, Beijing, 100084, China. zeping_hu@tsinghua.edu.cn.ORCID 0000-0003-4146-7750

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82072640National Natural Science Foundation of China (National Science Foundation of China) 92057209
6 · The paper itself

Abstract

Gastric cancer (GC) represents a significant burden of cancer-related mortality worldwide, underscoring an urgent need for the development of early detection strategies and precise postoperative interventions. However, the identification of non-invasive biomarkers for early diagnosis and patient risk stratification remains underexplored. Here, we conduct a targeted metabolomics analysis of 702 plasma samples from multi-center participants to elucidate the GC metabolic reprogramming. Our machine learning analysis reveals a 10-metabolite GC diagnostic model, which is validated in an external test set with a sensitivity of 0.905, outperforming conventional methods leveraging cancer protein markers (sensitivity < 0.40). Additionally, our machine learning-derived prognostic model demonstrates superior performance to traditional models utilizing clinical parameters and effectively stratifies patients into different risk groups to guide precision interventions. Collectively, our findings reveal the metabolic landscape of GC and identify two distinct biomarker panels that enable early detection and prognosis prediction respectively, thus facilitating precision medicine in GC.

Indexed as

Stomach NeoplasmsHumansMachine LearningMetabolic ReprogrammingMetabolomicsPrecision Medicine

Identifiers

PMID38395893
PMCPMC10891053

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.