Evidence map›Paper›PMID 38393970›Full record

ArticleeLife2024

Noncanonical usage of stop codons in ciliates expands proteins with structurally flexible Q-rich motifs.

Chi-Ning Chuang, Hou-Cheng Liu, Tai-Ting Woo, Ju-Lan Chao, Chiung-Ya Chen, Hisao-Tang Hu, Yi-Ping Hsueh, Ting-Fang Wang

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Chi-Ning Chuang *Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Hou-Cheng Liu *Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Tai-Ting WooInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.ORCID https://orcid.org/0000-0002-9717-1142
Ju-Lan ChaoInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Chiung-Ya ChenInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Hisao-Tang HuInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Yi-Ping HsuehInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.ORCID https://orcid.org/0000-0002-0866-6275
Ting-Fang WangInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.ORCID https://orcid.org/0000-0001-6306-9505
Institute of Molecular Biology, Academia Sinica · TWNational Chiayi University · TW

Funding

Academia Sinica Intramural fundingNational Science and Technology Council, Taiwan NSTC 110-2811-B-001-542
6 · The paper itself

Abstract

Serine(S)/threonine(T)-glutamine(Q) cluster domains (SCDs), polyglutamine (polyQ) tracts and polyglutamine/asparagine (polyQ/N) tracts are Q-rich motifs found in many proteins. SCDs often are intrinsically disordered regions that mediate protein phosphorylation and protein-protein interactions. PolyQ and polyQ/N tracts are structurally flexible sequences that trigger protein aggregation. We report that due to their high percentages of STQ or STQN amino acid content, four SCDs and three prion-causing Q/N-rich motifs of yeast proteins possess autonomous protein expression-enhancing activities. Since these Q-rich motifs can endow proteins with structural and functional plasticity, we suggest that they represent useful toolkits for evolutionary novelty. Comparative Gene Ontology (GO) analyses of the near-complete proteomes of 26 representative model eukaryotes reveal that Q-rich motifs prevail in proteins involved in specialized biological processes, including

Indexed as

DictyosteliumDrosophila melanogasterAnimalsCodon, TerminatorFungal ProteinsGlutamineMiceCodon, TerminatorFungal ProteinsGlutaminebiochemistrycandida albicanschemical biologyciliatecodon usagedictyostelium discoideumdrosophila melanogasterhomo sapiensintrinsically disordered regionmeiosismus musculusplasmodium falciparumpolyglutaminereplication slippageS. cerevisiaetetrahymena thermophila

Identifiers

PMID38393970
PMCPMC10942620
OpenAlexW4388273123

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.